SurvivalCalc: SurvivalCalc

In labmccormick/SPOCK: Analysis yeast density over time to determine growth and survival data

Description

SurvivalCalc removes nogrowth, contaminates and unexpected growth from experiments and then passes the modified results to both survivalIntegral and survivalPercentage for calculations, followed by statsCLS for statistics.

Usage

SurvivalCalc(
  firstDay = 1,
  resultspath = getwd(),
  rmflagged = TRUE,
  statsCLS = TRUE,
  measureInterval = 15
)

Arguments

firstDay	Specify the first day of measurements, default=1
resultspath	System path where the results are stored, default=current directory
rmflagged	This determines if flagged wells are removed from CLS statistics, default=TRUE
statsCLS	Should the code run statsCLS on the CLS results (TRUE/FALSE), default=TRUE
measureInterval	Interval in minutes for each OD measurement, default=15

labmccormick/SPOCK documentation built on May 25, 2021, 5:25 p.m.