SurvivalCalc: SurvivalCalc

Description Usage Arguments

View source: R/CLCalc.R

Description

SurvivalCalc removes nogrowth, contaminates and unexpected growth from experiments and then passes the modified results to both survivalIntegral and survivalPercentage for calculations, followed by statsCLS for statistics.

Usage

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SurvivalCalc(
  firstDay = 1,
  resultspath = getwd(),
  rmflagged = TRUE,
  statsCLS = TRUE,
  measureInterval = 15
)

Arguments

firstDay

Specify the first day of measurements, default=1

resultspath

System path where the results are stored, default=current directory

rmflagged

This determines if flagged wells are removed from CLS statistics, default=TRUE

statsCLS

Should the code run statsCLS on the CLS results (TRUE/FALSE), default=TRUE

measureInterval

Interval in minutes for each OD measurement, default=15


labmccormick/SPOCK documentation built on May 25, 2021, 5:25 p.m.