Files in laderast/surrogateMutation

Surrogate Mutations in Cancer Cells and Patients

.Rbuildignore

.Rhistory

.gitignore

.travis.yml

DESCRIPTION

NAMESPACE

R/annotateCopyResultsWithGistic.R R/buildGeneIntTable.R R/buildSurrogateTable.R R/calcNeighborMutations.R R/permuteNets.R R/permuteNetsParallel.R R/plot-results.R R/plotAllGraphs.R R/readPeakFile.R R/renderSubNetSimple.R R/surrogateMutation-internal.R README.md

data/intome.RData

data/surrogateNodes.txt

data/surrogateResult.RData

docs/articles/TCGA.E2.A1B5-CTNNB1.svg

docs/articles/TCGA.E2.A1B5-GTF2H1.svg

docs/articles/TCGAE2A1B5GSK3B.png

docs/articles/index.html

docs/articles/pancanBRCA-TCGA.AO.A12D-copyNumberAndMutations.txt

docs/articles/pancanBRCA-TCGA.AO.A12D-pvalue-results.txt

docs/articles/pancanBRCA-TCGA.BH.A0DS-copyNumberAndMutations.txt

docs/articles/pancanBRCA-TCGA.BH.A0DS-pvalue-results.txt

docs/articles/pancanBRCA-TCGA.E2.A1B5-copyNumberAndMutations.txt

docs/articles/pancanBRCA-TCGA.E2.A1B5-pvalue-results.txt

docs/articles/surrogate+Mutations.png

docs/articles/surrogateVignette.html

docs/articles/surrogateVignette.pdf

docs/articles/surrogateVignette_cache/html/__packages

docs/articles/surrogateVignette_cache/html/unnamed-chunk-4_c8377fcbb940fa72195356adaecad86a.RData

docs/articles/surrogateVignette_cache/html/unnamed-chunk-4_c8377fcbb940fa72195356adaecad86a.rdb

docs/articles/surrogateVignette_cache/html/unnamed-chunk-4_c8377fcbb940fa72195356adaecad86a.rdx

docs/articles/surrogateVignette_cache/html/unnamed-chunk-5_4c14e48a4c878ba467528e8957bf8695.RData

docs/articles/surrogateVignette_cache/html/unnamed-chunk-5_4c14e48a4c878ba467528e8957bf8695.rdb

docs/articles/surrogateVignette_cache/html/unnamed-chunk-5_4c14e48a4c878ba467528e8957bf8695.rdx

docs/articles/workflow.png

docs/authors.html

docs/index.html

docs/jquery.sticky-kit.min.js

docs/link.svg

docs/pkgdown.css

docs/pkgdown.js

docs/reference/buildGeneIntTable.html

docs/reference/buildSurrogateTable.html

docs/reference/calcNeighborMutations.html

docs/reference/filterGisticOutput.html

docs/reference/index.html

docs/reference/plotAllGraphs.html

docs/reference/readPeakFile.html

docs/reference/renderSubNetSimple.html

docs/reference/surrogateMutation-package.html

man/buildGeneIntTable.Rd man/buildSurrogateTable.Rd man/calcNeighborMutations.Rd man/filterGisticOutput.Rd man/plotAllGraphs.Rd man/readPeakFile.Rd man/renderSubNetSimple.Rd man/surrogateMutation-package.Rd

surrogateMutation.Rproj

tests/surrResultTests.R

vignettes/.Rhistory

vignettes/TCGA.E2.A1B5-GTF2H1.svg

vignettes/TCGAE2A1B5GSK3B.png

vignettes/surrogate+Mutations.png

vignettes/surrogateVignette.Rmd vignettes/surrogateVignette.pdf

vignettes/workflow.png

laderast/surrogateMutation documentation built on May 20, 2019, 7:33 p.m.