buildGeneIntTable: Build Mapping Table
In laderast/surrogateMutation: Surrogate Mutations in Cancer Cells and Patients

Description Usage Arguments Details Value Author(s) Examples

Builds a mapping table between gene symbol and node names in the HPRD interactome network.

1	buildGeneIntTable(intome)

intome

interactome (HPRD (Human Protein Reference Database) derived from the DLBCL package.)

This function takes the HPRD protein protein network that is available in the DLBCL package and produces a mapping table that is needed by functions in the surrogateMutation package.

A mapping table with the following columns:

`NodeName`	Node Names in the interactome network. These node names are in the format of GeneSymbol(EntrezID)
`Gene`	Gene Symbols, extracted from the NodeName.
`EntrezID`	Entrez Gene IDs, extracted from the NodeName.

Ted Laderas

##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.
library(DLBCL)
data(interactome)
geneIntTable <- buildGeneIntTable(interactome)
geneIntTable[1:5,]