readPeakFile: readPeakFile
In laderast/surrogateMutation: Surrogate Mutations in Cancer Cells and Patients

Description Usage Arguments Value Author(s) Examples

Given a gistic peak file (amp_genes or del_genes) that contains columns of genes organized by gene peak, extract the gene lists from all peaks as a single vector.

1	readPeakFile(gisticPeakFile)

gisticPeakFile

A GISTIC peak file supplied from running GISTIC.

A character vector with all genes extracted from each peak column.

Ted Laderas

##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.
Please refer to the vignette for an example.