| buildGeneIntTable | Build Mapping Table |
| buildSurrogateTable | Build melted surrogate table from surrogateResults. |
| calcNeighborMutations | Function to calculate surrogate mutations given DNA |
| filterGisticOutput | filterGisticOutput |
| plotAllGraphs | plotAllGraphs |
| readPeakFile | readPeakFile |
| renderSubNetSimple | renderSubNetSimple |
| surrogateMutation-package | Package for aggregating copy number and mutation data by PPI... |
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