###############################################################################
# Initialize colour constants
#' @export
cblue <- 1
#' @export
cgreen <- 2
#' @export
cred <- 3
#' @export
corange <- 4
#' @export
cpurple <- 5
#' @export
cgray <- 7
#' @export
cgrey <- 7
#' @export
cblack <- 8
#' @export
cwhite <- 9
###############################################################################
# Initialize palettes for plotting
palette.dark <- c(RColorBrewer::brewer.pal(12,"Paired")[seq(2,12,2)], "#777777", "#000000", "#ffffff")
palette.light <- c(RColorBrewer::brewer.pal(12,"Paired")[seq(1,12,2)], "#dddddd", "#000000", "#ffffff")
#' Palette of diverging light colours (Paired palette from RColorBrewer)
#'
#' @export
pal.light <- function(col, alpha=1) {
return (paste0(palette.light[col],format(as.hexmode(round(alpha*255)), width=2)))
}
#' Palette of diverging dark colours (Paired palette from RColorBrewer)
#'
#' @export
pal.dark <- function(col, alpha=1) {
return (paste0(palette.dark[col],format(as.hexmode(round(alpha*255)), width=2)))
}
###############################################################################
# Plot PDF figures
#' Need to follow with dev.off()
#'
#' @export
NewFig <- function(figname="fig.pdf", width=3.42, aspectratio=3/2, pointsize=6) {
pdf(file=figname, width=width, height=width/aspectratio, pointsize=pointsize, useDingbats=FALSE)
# Make figure
# dev.off()
}
#' Label plot in top left corner
#'
#' buggy
#'
#' @export
labelPlot <- function(label, cex=1) {
mfrow <- par("mfrow")
scale <- mfrow[2]
mar <- par("mar")
fin <- par("fin")
mai <- par("mai")
plotheight <- (fin[2]/scale)
#plotheight <- par("pin")[2]
textheight <- strheight(label, cex=1, units="inches")
lines <- (plotheight/textheight)-2
#print(paste(plotheight, textheight, lines, par("lheight")))
mtext(label, 2, adj=0, las=1, padj=-(lines/2), line=mar[2], cex=cex)
#for (i in -20:20)
# mtext(i, 2, adj=0, las=1, padj=i, line=2, cex=1.5)
}
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