API for lagelab/quack
Pathway analysis by learning connectivity patterns in known pathways and making gene prediction
| Global functions | |
|---|---|
| GetQuackClassifier | Source code |
| GetQuackModelingFile | Source code |
| bootstrapAUC_tm | Source code |
| cleanMem | Source code |
| computeStatsForAllConnectedNodes | Source code |
| getConnectedGeneIndices | Source code |
| getConnectivityInfo | Source code |
| getConnectivityInfoForPathwayList | Source code |
| getCustomSampleForTrainingPathways | Source code |
| getDisconnectedGeneIndices | Source code |
| getGeneIndices | Source code |
| getVariableImportance | Source code |
| makeGraphs | Man page Source code |
| quackPrediction | Man page Source code |
| returnMinSec | Source code |
| saveAUCCI | Source code |
| saveAUCVariantsToCSV | Source code |
| saveVariableImportance | Source code |
| splitHoldoutForAUC | Source code |
| splitTrainingAndHoldout | Source code |
| trainModel | Man page Source code |
