Description Usage Arguments Value Examples
View source: R/quackPrediction.R
Using the trained model from user uploaded network, using seed genes, predict genes that should be in a network.
1 2 | quackPrediction(usr_network_name, usr_seed_file, trained_network_file,
quack_gene_model, usr_output_loc, usr_pathway_file)
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usr_network_name |
Characters of user's network name, used in make graphs and train model functions. |
usr_seed_file |
Characters of path and name of user's seed file containing list of genes. |
trained_network_file |
Characters of path and name to network file from make graphs function. |
quack_gene_model |
Characters of path and name to quack gene model created from train model function. |
usr_output_loc |
Characters of location to save output file. |
usr_pathway_file |
Characters of name of pathway files, which can be found in data/ or user uploaded. |
text file
1 | quackPrediction("InWeb3", "data/SandersGenes.txt", "data/InWeb3.RData", "QuackGeneModel_Quackv1.3-InWeb3-General853StringentPathways.RData", "data/", "data/stringent853Pathways.RData")
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