trainModel: Train model function

In lagelab/quack: Pathway analysis by learning connectivity patterns in known pathways and making gene prediction

Description

Using user uploaded network and known pathways, train model using Quack algorithm.

Usage

trainModel(usr_modeling_file, usr_pathway_file, usr_output_loc, num_cores = 4)

Arguments

usr_modeling_file, usr_pathway_file, usr_output_loc, num_cores

Characters referring to the location and file name of user's network modeling file, path and name of pathway files, which can be found in data/ or user uploaded, and location to save output, number of cores to use[default=4].

Value

rdata file, csv and txt file

Examples

trainModel("data/InWeb3.RData", "data/stringent853Pathways.RData", "data/out/", num_cores=8)

lagelab/quack documentation built on May 25, 2019, 9:30 p.m.