API for lagelab/quack
Pathway analysis by learning connectivity patterns in known pathways and making gene prediction

Global functions
GetQuackClassifier Source code
GetQuackModelingFile Source code
bootstrapAUC_tm Source code
cleanMem Source code
computeStatsForAllConnectedNodes Source code
getConnectedGeneIndices Source code
getConnectivityInfo Source code
getConnectivityInfoForPathwayList Source code
getCustomSampleForTrainingPathways Source code
getDisconnectedGeneIndices Source code
getGeneIndices Source code
getVariableImportance Source code
makeGraphs Man page Source code
quackPrediction Man page Source code
returnMinSec Source code
saveAUCCI Source code
saveAUCVariantsToCSV Source code
saveVariableImportance Source code
splitHoldoutForAUC Source code
splitTrainingAndHoldout Source code
trainModel Man page Source code
lagelab/quack documentation built on Sept. 25, 2018, 11:31 a.m.