sstable.ae: Create an adverse event summary table

In lampk/C306: Collection of useful R codes for data analysis from the Biostatistics group at OUCRU

Description

A function to create a simple adverse event summary table.

Usage

sstable.ae(ae_data, fullid_data, id.var, aetype.var, grade.var = NULL,
  arm.var, digits = 0, test = TRUE, pdigits = 3, pcutoff = 0.001,
  chisq.test = FALSE, correct = FALSE, simulate.p.value = FALSE,
  B = 2000, workspace = 1e+06, hybrid = FALSE, footer = NULL,
  flextable = TRUE, bg = "#F2EFEE")

Arguments

ae_data	a data frame contains adverse event data.
fullid_data	a data frame contains treatment arm data of all participants (not just those had adverse event).
id.var	a character specifies name of study id variable (exists in both adverse event data and treatment arm data).
aetype.var	a character specifies name of adverse event type variable (exists in adverse event data).
grade.var	a character specifies name of adverse event grade variable (exists in adverse event data).
arm.var	a character specifies name of treatment arm variable (exists in treatment arm data).
digits	a number specifies number of significant digits for numeric statistics.
test	a logical value specifies whether a statistical test will be performed to compare between treatment arms.
pdigits	a number specifies number of significant digits for p value.
pcutoff	a number specifies threshold value of p value to be displayed as "< pcutoff".
chisq.test	a logical value specifies whether Chi-squared test or Fisher's exact test will be used to compare between treatment arms.
correct	a parameter for chisq.test().
simulate.p.value	a parameter for chisq.test() and fisher.test().
B	a parameter for chisq.test() and fisher.test().
workspace	a parameter for fisher.test().
hybrid	a parameter for fisher.test().
footer	a vector of strings to be used as footnote of table.
flextable	a logical value specifies whether output will be a flextable-type table.
bg	a character specifies color of the odd rows in the body of flextable-type table.

Value

a flextable-type table or a list with values/headers/footers

lampk/C306 documentation built on Sept. 11, 2019, 8:03 a.m.