sstable.survcomp: Summarize results for a Cox survival model with the treatment...

In lampk/C306: Collection of useful R codes for data analysis from the Biostatistics group at OUCRU

Description

A function to summarize results for a Cox survival model with the treatment arm (variable "arm") as the main covariate

Usage

sstable.survcomp(model, data, add.risk = TRUE,
  add.prop.haz.test = TRUE, medsum = TRUE, digits = 2, pdigits = 3,
  pcutoff = 0.001, footer = NULL, flextable = TRUE, bg = "#F2EFEE")

Arguments

model	a formula which can be used to fit the Cox survival model. This formula can include other covariates than arm BUT arm must be the first covariate in the model.
data	a data frame to fir the Cox survival model.
add.risk	a logical value specifies whether the event probability ("absolute risk") at time "infinity" should be displayed.
add.prop.haz.test	a logical value specifies whether a test for proportional hazards should be added.
medsum	a logical value specifies whether median (IQR) of time to event should be described.
digits	a number specifies number of significant digits for numeric statistics.
pdigits	a number specifies number of significant digits for p value.
pcutoff	a number specifies threshold value of p value to be displayed as "< pcutoff".
footer	a vector of strings to be used as footnote of table.
flextable	a logical value specifies whether output will be a flextable-type table.
bg	a character specifies color of the odd rows in the body of flextable-type table.

Value

a flextable-type table or a list with values/headers/footers

Author(s)

This function was originally written by Marcel Wolbers. Lam Phung Khanh did some modification.

lampk/C306 documentation built on Sept. 11, 2019, 8:03 a.m.