do_APP_simple_richness_analysis_and_output | R Documentation |
Run reserve selector on APP problem and write output from all analysis
do_APP_simple_richness_analysis_and_output( APP_bd_prob, COR_bd_prob, parameters, starting_dir, rs_method_name, forward = TRUE, src_rds_file_dir = NULL, spp_rep_targets = rep(1, COR_bd_prob@num_spp) )
APP_bd_prob |
an apparent Xu_bd_problem |
COR_bd_prob |
a correct Xu_bd_problem |
parameters |
parameters list for the run, usually derived from project.yaml and can have a varying number and set of elements depending on the run |
starting_dir |
string containing full path of top directory where problems and/or runs are to be created |
rs_method_name |
character string for reserve selection method, e.g., "marxan_sa" |
forward |
boolean indicating whether to do the greedy search in the forward direction (adding PUs to the solution set) or the backward direction (removing PUs from the solution set); TRUE implies forward |
src_rds_file_dir |
string containing full path of directory where source rds file is or was found |
spp_rep_targets |
numeric vector with a target abundance for each species in the problem |
Returns nothing
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