Files in langfob/bdpg
Package For Building and Testing Biodiversity Problem Generators

.Rbuildignore

.gitignore

.travis.yml

DESCRIPTION

LICENSE

NAMESPACE

R/.gitignore

R/BDProb.R R/Ensemble_holding_area/do_ensemble_analysis_and_output.R R/Ensemble_holding_area/gscp_5_derive_control_parameters.before fix 2021 05 18 12 53.R R/Old_code/ggplot_20_variant_results.R R/RSrun.R R/apply_error_to_spp_occupancy_data.R R/bdpg-package.r R/biodivprobgen_initialization.R R/biodivprobgen_utilities.R R/compute_checksums.R R/compute_pu_and_spp_histograms_from_marxan_pusvpr_file.R R/create_dirs.R R/do_Greedy_analysis_and_output.R R/do_gurobi_analysis_and_output.R R/do_marxan_analysis_and_output.R R/do_rs_analysis_and_output.R R/do_simple_richness_analysis_and_output.R R/do_unprotected_richness_analysis_and_output.R R/do_zonation_analysis_and_output.R R/expdirs.R R/gen_20_basic_variants.R R/gen_4_basic_variants.R R/gen_6_basic_variants.R R/gen_bdprob.R R/gen_lognormal_overlay.R R/gen_single_bdprob.R R/gen_single_bdprob_APP.R R/gen_wrapped_bdprob.R R/greedy_reserve_selection.R R/gscp_10a_clean_up_completed_graph_structures.R R/gscp_10b_compute_solution_rep_levels_and_costs.R R/gscp_10c_build_adj_and_cooccurrence_matrices.R R/gscp_11_summarize_and_plot_graph_structure_information.R R/gscp_11a_network_measures_using_bipartite_package.R R/gscp_11b_network_measures_using_igraph_package.R R/gscp_11c_init_object_graph_data.R R/gscp_12_write_network_to_marxan_files.R R/gscp_13_write_gurobi_control_file_and_run_gurobi.R R/gscp_13_write_marxan_control_file_and_run_marxan.R R/gscp_13_write_simple_richness_control_file_and_run_SR.R R/gscp_14_read_marxan_output_files.R R/gscp_14a_compute_marxan_solution_scores.R R/gscp_14b_compute_solution_scores.R R/gscp_14c_plot_incremental_marxan_summed_solution_reps.R R/gscp_14d_see_if_marxan_best_was_actually_best.R R/gscp_15_create_master_output_structure.R R/gscp_15a_write_prob_results.R R/gscp_15c_read_partial_results_files.R R/gscp_5_derive_control_parameters.R R/gscp_6_create_data_structures.R R/gscp_8_link_nodes_within_groups.R R/gscp_9_link_nodes_between_groups.R R/gscp_9a_create_Xu_graph.R R/load_and_parse_Xu_set_cover_problem_file.R R/load_existing_tzar_run.R R/random_seed_setting_utilities.R R/single_action_using_tzar_reps.R R/std_param_defns.R R/write_marxan_input_files.R R/z_using_for.R R/z_using_funcs.R R/z_using_inline.R README.Rmd README.md

bdpg.Rproj

tests/testthat/.gitignore

tests/testthat/greedy/unprotected_richness_HOLD.txt

tests/testthat/setup_for_test_1__gen_bdprobs.R tests/testthat/setup_for_test_1__gen_single_bdprob_wrap.R tests/testthat/test_gen_single_bdprob.R tests/testthat/test_gen_single_bdprob_app.R tests/testthat/test_gen_single_bdprob_wrap.R

vignettes/.gitignore

vignettes/abbreviations.Rmd vignettes/aggregation_procedures_by_hand.Rmd vignettes/bdpg.R vignettes/bdpg.Rmd

vignettes/bdpg.html

vignettes/bdpgTopLevelControl.R vignettes/bdpgTopLevelControl.Rmd

vignettes/bdpgTopLevelControl.html

vignettes/data_dictionary.Rmd vignettes/inputParameters.Rmd

vignettes/inputParameters.html

vignettes/reproducibility.Rmd vignettes/reserveSelectors.Rmd

vignettes/reserveSelectors.html

vignettes/reserveSelectors.nb.html

vignettes/tzarYamlCmds.Rmd

vignettes/tzarYamlCmds.html

langfob/bdpg documentation built on Dec. 8, 2022, 5:33 a.m.

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langfob/bdpg
Package For Building and Testing Biodiversity Problem Generators

Files in langfob/bdpg
Package For Building and Testing Biodiversity Problem Generators

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langfob/bdpg Package For Building and Testing Biodiversity Problem Generators

Files in langfob/bdpg Package For Building and Testing Biodiversity Problem Generators

R Package Documentation

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langfob/bdpg
Package For Building and Testing Biodiversity Problem Generators

Files in langfob/bdpg
Package For Building and Testing Biodiversity Problem Generators