write_all_marxan_input_files_from_vectors: Write all marxan input files except bound.dat and input.dat...

In langfob/bdpg: Package For Building and Testing Biodiversity Problem Generators

Write all marxan input files except bound.dat and input.dat given vectors for individual elements.

Description

Write all marxan input files except bound.dat and input.dat given vectors for individual elements.

Usage

write_all_marxan_input_files_from_vectors(
  PU_IDs,
  spp_IDs,
  spp_PU_amount_table,
  spf_values,
  target_values,
  cost_values,
  status_values
)

Arguments

PU_IDs	A vector of planning unit IDs
spp_IDs	A vector of species IDs
spp_PU_amount_table	A data frame of species IDs vs planning unit IDs
spf_values	A vector of species penalty factors
target_values	A vector of target values
cost_values	A vector of costs
status_values	A vector of status values

Details

The spp_PU_amount_table is expected to have 3 columns called (in left to right order) "species", "pu", and "amount". Marxan requires this table to be sorted in increasing order on the planning unit column. I don't think the order within planning unit matters on the other columns. See source code for the test function gen_random_spp_PU_amount_table for an example of creating this table.

Value

nothing.

Examples

## Not run: 
num_PUs = 100
num_spp = 3
PU_IDs = 1:num_PUs
spp_IDs = 1:num_spp
spf_values = rep (10, num_spp)
target_values = rep (1, num_spp)
cost_values = rep (1000, num_PUs)
status_values = rep (0, num_PUs)

spp_PU_amount_table = gen_random_spp_PU_amount_table (num_PUs, num_spp)

    #  Write all input files at once.
write_all_marxan_input_files_from_vectors (PU_IDs, spp_IDs, spp_PU_amount_table,
                                           spf_values, target_values,
                                           cost_values, status_values)

    #  Write each input file individually.
write_marxan_pu.dat_input_file_from_vectors (PU_IDs, cost_values, status_values)
write_marxan_spec.dat_input_file_from_vectors (spp_IDs, spf_values, target_values)
write_marxan_puvspr.dat_input_file (spp_PU_amount_table)
         
## End(Not run)

langfob/bdpg documentation built on Dec. 8, 2022, 5:33 a.m.