do_COR_simple_richness_analysis_and_output: Run simple_richness on COR problem and write output from all...

In langfob/bdpg: Package For Building and Testing Biodiversity Problem Generators

Run simple_richness on COR problem and write output from all analysis

Description

Run simple_richness on COR problem and write output from all analysis

Usage

do_COR_simple_richness_analysis_and_output(
  COR_bd_prob,
  parameters,
  starting_dir,
  rs_method_name,
  forward = TRUE,
  src_rds_file_dir = NULL,
  spp_rep_targets = rep(1, COR_bd_prob@num_spp)
)

Arguments

COR_bd_prob	a correct Xu_bd_problem
parameters	parameters list for the run, usually derived from project.yaml and can have a varying number and set of elements depending on the run
starting_dir	string containing full path of top directory where problems and/or runs are to be created
rs_method_name	character string for reserve selection method, e.g., "marxan_sa"
forward	boolean indicating whether to do the greedy search in the forward direction (adding PUs to the solution set) or the backward direction (removing PUs from the solution set); TRUE implies forward
src_rds_file_dir	string containing full path of directory where source rds file is or was found
spp_rep_targets	numeric vector with a target abundance for each species in the problem

Value

Returns nothing

langfob/bdpg documentation built on Dec. 8, 2022, 5:33 a.m.