do_rs_analysis_and_output: Run reserve selector(s) on bdproblem and write output from...

In langfob/bdpg: Package For Building and Testing Biodiversity Problem Generators

Run reserve selector(s) on bdproblem and write output from all analyses

Description

Note that the COR and APP arguments are the same if running on a correct problem.

Usage

do_rs_analysis_and_output(
  APP_bd_prob,
  COR_bd_prob,
  parameters,
  starting_dir,
  src_rds_file_dir = NULL,
  spp_rep_targets = rep(1, COR_bd_prob@num_spp)
)

Arguments

APP_bd_prob	an apparent Xu_bd_problem
COR_bd_prob	a correct Xu_bd_problem
parameters	parameters list for the run, usually derived from project.yaml and can have a varying number and set of elements depending on the run
starting_dir	string containing full path of top directory where problems and/or runs are to be created
src_rds_file_dir	string containing full path of directory where source rds file is or was found
spp_rep_targets	numeric vector with a target abundance for each species in the problem

Value

Returns named list containing top directory for each reserve selector that was run

langfob/bdpg documentation built on Dec. 8, 2022, 5:33 a.m.