wrap_abundance_dist_around_Xu_problem: Wrap abundance distribution around Xu problem

In langfob/bdpg: Package For Building and Testing Biodiversity Problem Generators

Wrap abundance distribution around Xu problem

Description

Note that this function doesn't care where you got the abundances, i.e., they don't have to have come from the lognormal generator. It can be any abundance set that you want, as long as it contains at least as many species sitting on exactly 2 patches as the base Xu problem has. It can have more than the Xu problem, but not less.

Usage

wrap_abundance_dist_around_Xu_problem(
  starting_dir,
  parameters,
  rounded_abundances,
  Xu_bdprob,
  dep_set_PUs_eligible,
  tot_num_PUs_in_landscape,
  seed_value_for_search_list,
  allow_imperfect_wrap,
  search_outfile_name_base,
  search_outfile_name,
  wrap_prob_name_stem = "wrap_prob",
  cor_dir_name_stem = "cor"
)

Arguments

starting_dir	character string
parameters	parameters list for the run, usually derived from project.yaml and can have a varying number and set of elements depending on the run
rounded_abundances	DESCRIPTION.
Xu_bdprob	DESCRIPTION.
dep_set_PUs_eligible	DESCRIPTION.
tot_num_PUs_in_landscape	DESCRIPTION.
seed_value_for_search_list	blah
allow_imperfect_wrap	blah
search_outfile_name_base	character string
search_outfile_name	character string
wrap_prob_name_stem	string
cor_dir_name_stem	string

Value

Returns a Xu_wrapped_bd_problem

langfob/bdpg documentation built on Dec. 8, 2022, 5:33 a.m.