do_marxan_analysis_and_output: Run marxan on bd problem and write output from all analysis

In langfob/bdpg: Package For Building and Testing Biodiversity Problem Generators

Run marxan on bd problem and write output from all analysis

Description

Note that the COR and APP arguments are the same if running on a correct problem.

Usage

do_marxan_analysis_and_output(
  APP_bd_prob,
  COR_bd_prob,
  parameters,
  starting_dir,
  rs_method_name,
  src_rds_file_dir = NULL,
  spp_rep_targets = rep(1, COR_bd_prob@num_spp)
)

Arguments

APP_bd_prob	an apparent Xu_bd_problem
COR_bd_prob	a correct Xu_bd_problem
parameters	parameters list for the run, usually derived from project.yaml and can have a varying number and set of elements depending on the run
starting_dir	string containing full path of top directory where problems and/or runs are to be created
rs_method_name	character string for reserve selection method, e.g., "marxan_sa"
src_rds_file_dir	string containing full path of directory where source rds file is or was found
spp_rep_targets	numeric vector with a target abundance for each species in the problem

Value

Returns nothing

langfob/bdpg documentation built on Dec. 8, 2022, 5:33 a.m.