redundancy: Latapy et al redundancy measure

In langfob/bdpg: Package For Building and Testing Biodiversity Problem Generators

Latapy et al redundancy measure

Description

Latapy et al redundancy measure

Usage

redundancy(g, top_bottom_vertex_type = FALSE)

Arguments

g	graph
top_bottom_vertex_type	not sure...

Details

The code above is missing the code for the final (and possibly most important) metric in the Latapy et al paper, i.e., the redundancy coefficient. That measure is provided in the python NetworkX package:

http://networkx.lanl.gov/reference/generated/networkx.algorithms.bipartite.redundancy.node_redundancy.html

Python source code for the function is at:

http://networkx.lanl.gov/_modules/networkx/algorithms/bipartite/redundancy.html#node_redundancy

Simone Gabbriellini has tried to code the redundancy function in R and asked some questions about it on at least one mailing list. The exchanges are pretty long, so I won't insert them right here. I'll insert a couple of the posts and followups at the bottom of this file so that you don't have to go chase up the sources for what I've done here.

langfob/bdpg documentation built on Dec. 8, 2022, 5:33 a.m.