filterOTU: Filter OTUs
In larssnip/midiv: MiDiv-lab bioinformatics
View source: R/midiv_wrangling.R
filterOTU R Documentation
Filter OTUs
Description
Filtering OTUs in a midiv object.
Usage
filterOTU(midiv.obj, OTU_to_keep)
Arguments
midiv.obj
A midiv object (list), see midivObject.
OTU_to_keep
A logical vector indicating which OTUs to keep (TRUE).
Details
This function filters OTUs, i.e. keep a subsets of rows in the
readcount.mat and sequence.tbl inside the midiv.obj list.
The OTU_to_keep should be a logical vector with one element for each
OTU in the object.
Value
A midiv object (list) with (potentially) fewer OTUs.
Author(s)
Lars Snipen.
larssnip/midiv documentation built on Jan. 20, 2025, 6:22 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/midiv_wrangling.R
| filterOTU | R Documentation |
Filter OTUs
Description
Filtering OTUs in a midiv object.
Usage
filterOTU(midiv.obj, OTU_to_keep)
Arguments
midiv.obj |
A midiv object (list), see |
OTU_to_keep |
A logical vector indicating which OTUs to keep (TRUE). |
Details
This function filters OTUs, i.e. keep a subsets of rows in the
readcount.mat and sequence.tbl inside the midiv.obj list.
The OTU_to_keep should be a logical vector with one element for each
OTU in the object.
Value
A midiv object (list) with (potentially) fewer OTUs.
Author(s)
Lars Snipen.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.