phyloseq2midiv: Convert phyloseq to midiv object
In larssnip/midiv: MiDiv-lab bioinformatics
phyloseq2midiv R Documentation
Convert phyloseq to midiv object
Description
Creating a simple list from a phyloseq object.
Usage
phyloseq2midiv(phyloseq.obj)
Arguments
phyloseq.obj
A phyloseq object, see phyloseq.
Details
This function converts a phyloseq object to a simple list
giving the entries the names as in midivObject.
This may be convenient for some wrangling on the data, and then perhaps converting
it back to a phyloseq object again with midiv2phyloseq.
Value
A list with entries as in a midiv object, except that the
sequence.tbl do not contain sequences, only taxonomy.
Author(s)
Lars Snipen.
larssnip/midiv documentation built on Jan. 20, 2025, 6:22 p.m.
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| phyloseq2midiv | R Documentation |
Convert phyloseq to midiv object
Description
Creating a simple list from a phyloseq object.
Usage
phyloseq2midiv(phyloseq.obj)
Arguments
phyloseq.obj |
A phyloseq object, see |
Details
This function converts a phyloseq object to a simple list
giving the entries the names as in midivObject.
This may be convenient for some wrangling on the data, and then perhaps converting
it back to a phyloseq object again with midiv2phyloseq.
Value
A list with entries as in a midiv object, except that the
sequence.tbl do not contain sequences, only taxonomy.
Author(s)
Lars Snipen.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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