sintaxFilter: Filter SINTAX taxonomy
In larssnip/midiv: MiDiv-lab bioinformatics
sintaxFilter R Documentation
Filter SINTAX taxonomy
Description
Filtering the taxonomy based on SINTAX scores.
Usage
sintaxFilter(taxonomy.tbl, sintax.threshold = 0.5)
Arguments
taxonomy.tbl
A data.frame with SINTAX taxonomy results
sintax.threshold
The threshold for accepting a classification
Details
A taxonomy.tbl from SINTAX has a score-column for each of the
ranks, e.g. the domain rank has a domain_score. If a score is below
the sintax.threshold the corresponding taxon is set to NA.
Finally, all score-columns are removed from the table.
Value
A table with pure taxonomy results after filtering. The score columns
have been removed.
Author(s)
Lars Snipen.
larssnip/midiv documentation built on Jan. 20, 2025, 6:22 p.m.
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| sintaxFilter | R Documentation |
Filter SINTAX taxonomy
Description
Filtering the taxonomy based on SINTAX scores.
Usage
sintaxFilter(taxonomy.tbl, sintax.threshold = 0.5)
Arguments
taxonomy.tbl |
A data.frame with SINTAX taxonomy results |
sintax.threshold |
The threshold for accepting a classification |
Details
A taxonomy.tbl from SINTAX has a score-column for each of the
ranks, e.g. the domain rank has a domain_score. If a score is below
the sintax.threshold the corresponding taxon is set to NA.
Finally, all score-columns are removed from the table.
Value
A table with pure taxonomy results after filtering. The score columns have been removed.
Author(s)
Lars Snipen.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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