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man/align_graph.Rd
man/align_topics.Rd
man/alignment-class.Rd
man/compute_number_of_paths.Rd
man/compute_strain_switching_scores_of_model.Rd
man/discrepancy.Rd
man/dot-check_params.Rd
man/dot-set_lda_seed.Rd
man/figures/README-alignment-viz-2.png
man/figures/README-pressure-1.png
man/kl_div.Rd
man/kl_mat.Rd
man/models-alignment-method.Rd
man/n_models-alignment-method.Rd
man/n_topics-alignment-method.Rd
man/plot-alignment-missing-method.Rd
man/plot_alignment.Rd
man/plot_beta.Rd
man/plot_number_of_paths.Rd
man/product_weights.Rd
man/remove_summaries.Rd
man/run_lda_models.Rd
man/setup_edges.Rd
man/show-alignment-method.Rd
man/topic_coherence.Rd
man/topic_refinement.Rd
man/topics-alignment-method.Rd
man/transport_weights.Rd
man/trim_betas.Rd
man/vm_data.Rd
man/weights-alignment-method.Rd
tests/testthat.R
tests/testthat/test-align_topics.R
tests/testthat/test-reorder.R
tests/testthat/test-topic_label.R
vignettes/.DS_Store
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vignettes/_many_ldas.Rmd
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vignettes/basic-alignment.Rmd
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vignettes/microbiome-demo.Rmd
vignettes/strain-switching.Rmd
vignettes/timing.Rmd