infected_population_matrix: infected_population_natrix

In laurettemhlanga/PopulationSimulation: Population Simulation

infected_population_natrix

Description

a function that returns a matrix of the infected population for a given birthcohort

Usage

infected_population_matrix(
  incidence_mat,
  base_mortality_mat,
  time_step,
  susceptible,
  pmtct_birthcount,
  cumulative_infected_survival
)

Arguments

incidence_mat	associated incidence rates
base_mortality_mat	associated excess mortality survivial rates the probability of surving infection or death in the susceptible state
time_step	the time or age difference between to consecutive times or ages the probability of surving infection or death in the susceptible statemi.e it is uniform in all values supplied
susceptible	the susceptible population counts
pmtct_birthcount	number of newborns infected
cumulative_infected_survival	the survival probability of being aged a at time t having been infected for tau years.

Value

returns an matrix of dimensions time t , age a and time since infection - tau

laurettemhlanga/PopulationSimulation documentation built on Sept. 9, 2023, 12:39 p.m.