laurieKell/biodyn
Biomass Dynamic Model

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Functions
268
Source code
53
Man pages
39
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laurieKell/biodyn: Biomass Dynamic Model
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API

API for laurieKell/biodyn
Biomass Dynamic Model

Global functions
.calcSigma Source code
D Source code
FLBRP2biodyn Source code
FLQuantPoints Source code
FLStock2biodyn Man page Source code
I Source code
K Man page Source code
NewRhap Source code
P Source code
ROregimeSHFT Source code
activeParams Source code
admbCor Source code Source code
admbFit Source code
admbPlt Source code
admbProfile Source code
alpha Source code
as Man page
beta Source code
bh Source code
bh.bounded Source code
biodyn Man page
biodyn,ANY,ANY-method Man page Man page
biodyn,ANY-method Man page
biodyn,FLBRP,FLStock-method Man page Man page
biodyn-class Man page
biodyn-method Man page Man page
biodyn-package Man page
biodyns Man page
biodyns,biodyn-method Man page
biodyns,list-method Man page
biodyns,missing-method Man page
bmsy Man page
bmsy,biodyn,missing-method Man page
bmsy,biodyn,numeric-method Man page
bmsy,character,FLPar-method Man page
bmsy,factor,FLPar-method Man page
bmsyFletcher Source code
bmsyFn Source code
bmsyFox Source code
bmsyGenfit Source code
bmsyGulland Source code
bmsyLogistic Source code
bmsyPellaT Source code
bmsySchaefer Source code
bmsyShepherd Source code
boot Man page
boot,biodyn-method Man page
boot-method Man page
bootFn Source code
boundPar Source code
calcB0 Source code
calcElasticity Source code
calcLl Source code
calcLogLik Source code Source code
calcQ Source code
calcSS Source code
calcSigma Source code Source code
combineFlr Source code Source code
computePrd Man page
computePrd,biodyn,FLQuant-method Man page
computePrd,biodyn,missing-method Man page
computePrd,biodyn,numeric-method Man page
control Man page
control<- Man page
controlFn Man page
cpueBiodym2Aspic Source code
createFLAccesors Source code
cv Source code
cv2 Source code
defaultParams Source code
delta Source code
demo Source code
demoBiodyn Source code
diagsFn Source code
exe Source code
fCPP Source code
fit Man page
fit,biodyn,FLQuant-method Man page
fit,biodyn,FLQuantJK-method Man page
fit,biodyn,FLQuants-method Man page
fit-method Man page
fitPella Source code
fmsy Man page
fmsy,biodyn,missing-method Man page
fmsy,biodyn,numeric-method Man page
fmsy,character,FLPar-method Man page
fmsy,factor,FLPar-method Man page
fmsy,fmsy-method Man page
fmsyFn Source code
fn Source code Source code
fnB Source code
fnF Source code Source code
fnJ Source code
fnY Source code Source code
fr Source code
fwd Man page
fwd,biodyn,FLQuants-method Man page
fwd,biodyn,missing-method Man page
fwd-method Man page
fwdFn Source code
getADMBHessian Source code
getDiags Source code
getP Source code
getParams Source code
getPella Source code
getRK Source code
gradF Source code
gradMinF Source code
gradMinY Source code
gradY Source code
guessK Source code
hcr Man page
hcr,biodyn-method Man page
hcrFn Source code
hcrParam Man page Source code
hcrPlot,biodyn-method Man page
hcrPlot-method Man page
hcrSBT1 Source code
iavFn Source code
is.biodyn Man page Source code
kobe Man page
kobe,biodyn,missing-method Man page
kobe,biodyns,ANY-method Man page
kobe,biodyns,missing-method Man page
kobeFn Source code
kobeMar Source code
llQ Source code
llSigma Source code
logl Source code
logl.ar1 Source code
loglFn Source code
maxFn Source code
minF Source code
minFn Source code
minY Source code
modelParams Source code
mse Man page
mseBiodyn Man page Source code
msy Man page
msy,biodyn,missing-method Man page
msy,biodyn,numeric-method Man page
msy,character,FLPar-method Man page
msy,factor,FLPar-method Man page
msyFletcher Source code
msyFn Source code
msyFox Source code
msyGenfit Source code
msyGulland Source code
msyLogistic Source code
msyPellaT Source code
msySchaefer Source code
msyShepherd Source code
mvn Man page Source code
nr Source code
oemFn Source code
penalty Source code
plot,biodyn,missing-method Man page
plot,biodyns,missing-method Man page
plotComp Source code
plotComps Source code
plotEql Man page
plotEql,biodyn,FLBRP-method Man page
plotEql,biodyn,FLQuant-method Man page
plotEql,biodyn,missing-method Man page
plotEqlfn Source code
plotJack Man page Source code
plotMSE Man page
plotMSE,biodyn,FLStock,FLBRP-method Man page
plotMSEfn Source code
plotPrd Man page
plotPrd,biodyn,FLBRP-method Man page
plotPrd,biodyn,FLQuant-method Man page
plotPrd,biodyn,missing-method Man page
plotPrdfn Source code
plotProdfn Source code Source code
powerAnalysis Man page
powerAnalysis,biodyn,biodyn-method Man page
powerAnalysis,biodyn,missing-method Man page
powerAnalysis-method Man page
prdFn Source code
priorCalc Source code
priorFn Man page Source code
prj Source code
profile,biodyn-method Man page
profileGrid Source code
proj Source code
quantiles Source code
randJack Man page
randJack,numeric,FLPar,FLPar-method Man page
randJack,numeric,FLQuant,FLQuant-method Man page
randJack-method Man page
randJackFn Source code
read.admb Source code
read.psv Source code
read.rep Source code
readADMB Source code
refJacobian Source code
refpts Man page
refpts,ANY Man page
refpts,biodyn,missing-method Man page
refpts,character,FLPar-method Man page
refpts,factor,FLPar-method Man page
refpts-method Man page
refptsFn Source code
relFn Source code
relVar Source code
rod Source code
runMSE Man page Source code
setControl<- Man page
setControl<-,biodyn,FLPar-method Man page
setControl<-,biodyn,FLQuant-method Man page
setControl<-,biodyn,FLQuants-method Man page
setExe Source code
setParams<- Man page
setParams<-,biodyn,FLBRP-method Man page
setParams<-,biodyn,FLPar-method Man page
setParams<-,biodyn,FLQuant-method Man page
setParams<-,biodyn,FLQuants-method Man page
setParams<-,biodyn,data.frame-method Man page
setPella Source code
setQ Source code
sim Man page
sim,FLStock,ANY-method Man page
sim,missing,missing-method Man page
sim-method Man page
slv Source code
stockCPP Source code
survey Source code
tac Man page
tac,biodyn-method Man page
tac-method Man page
tseries Man page
tseries,FLStock,missing Man page
tseriesFn1 Source code
tseriesFn2 Source code
u Source code
udms Source code
unboundPar Source code
validity Source code Source code
whooow Source code Source code
writeADMB Source code
xval Man page
xval,biodyn-method Man page
xval-method Man page
xvalFn Source code
yield Source code
laurieKell/biodyn documentation built on May 20, 2019, 7:58 p.m.

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