Files in laurieKell/biodyn
Biomass Dynamic Model

.Rbuildignore
.Rbuildignore~
.gitignore
BinaryFiles
DESCRIPTION
DESCRIPTION~
NAMESPACE
R/RcppExports.R R/bdm-methods.R R/biodyn-F.R R/biodyn-FLQuantiles.R R/biodyn-accessors.R R/biodyn-admb.R R/biodyn-boot.R R/biodyn-class.R R/biodyn-coerce.R R/biodyn-combine.R R/biodyn-constructors.R R/biodyn-control.R R/biodyn-cpp.R R/biodyn-delta.R R/biodyn-diags.R R/biodyn-fwd.R R/biodyn-generic.R R/biodyn-ggplotFL.R R/biodyn-hcr.R R/biodyn-hst.R R/biodyn-jackRand.R R/biodyn-jackSummary.R R/biodyn-kobe.R R/biodyn-ll.R R/biodyn-mcmc.R R/biodyn-methods.R R/biodyn-mng.R R/biodyn-mse-application.R R/biodyn-mse.R R/biodyn-msy.R R/biodyn-mvn.R R/biodyn-oem.R R/biodyn-pella.R R/biodyn-pid.R R/biodyn-plots.R R/biodyn-priors.R R/biodyn-profile.R R/biodyn-proj.R R/biodyn-stars.R R/biodyn-tseries.R R/biodyn-xval.R R/bounds.R R/plotComp.R R/sbt-mse.R README.md
biodyn.Rproj
collate.R~
inst/bin/linux/pella
inst/bin/windows/pella.exe
inst/include/FLCatch.h
inst/include/FLFishery.h
inst/include/FLQuant_base.h
inst/include/FLQuant_multidim.h
inst/include/FLStock.h
inst/include/FLasher.h
inst/include/Rcpp.h
inst/include/Rcpp/Benchmark/Timer.h
inst/include/Rcpp/DataFrame.h
inst/include/Rcpp/Date.h
inst/include/Rcpp/DateVector.h
inst/include/Rcpp/Datetime.h
inst/include/Rcpp/DatetimeVector.h
inst/include/Rcpp/Dimension.h
inst/include/Rcpp/DottedPair.h
inst/include/Rcpp/DottedPairImpl.h
inst/include/Rcpp/Environment.h
inst/include/Rcpp/Extractor.h
inst/include/Rcpp/Fast.h
inst/include/Rcpp/Formula.h
inst/include/Rcpp/Function.h
inst/include/Rcpp/InputParameter.h
inst/include/Rcpp/InternalFunction.h
inst/include/Rcpp/InternalFunctionWithStdFunction.h
inst/include/Rcpp/Interrupt.h
inst/include/Rcpp/Language.h
inst/include/Rcpp/Module.h
inst/include/Rcpp/Na_Proxy.h
inst/include/Rcpp/Named.h
inst/include/Rcpp/Pairlist.h
inst/include/Rcpp/Promise.h
inst/include/Rcpp/RObject.h
inst/include/Rcpp/Reference.h
inst/include/Rcpp/Rmath.h
inst/include/Rcpp/S4.h
inst/include/Rcpp/StretchyList.h
inst/include/Rcpp/String.h
inst/include/Rcpp/StringTransformer.h
inst/include/Rcpp/Symbol.h
inst/include/Rcpp/Vector.h
inst/include/Rcpp/WeakReference.h
inst/include/Rcpp/XPtr.h
inst/include/Rcpp/algo.h
inst/include/Rcpp/api/bones/Date.h
inst/include/Rcpp/api/bones/Datetime.h
inst/include/Rcpp/api/bones/bones.h
inst/include/Rcpp/api/bones/wrap_extra_steps.h
inst/include/Rcpp/api/meat/DataFrame.h
inst/include/Rcpp/api/meat/Date.h
inst/include/Rcpp/api/meat/Datetime.h
inst/include/Rcpp/api/meat/Dimension.h
inst/include/Rcpp/api/meat/DottedPairImpl.h
inst/include/Rcpp/api/meat/Environment.h
inst/include/Rcpp/api/meat/Rcpp_eval.h
inst/include/Rcpp/api/meat/S4.h
inst/include/Rcpp/api/meat/StretchyList.h
inst/include/Rcpp/api/meat/Vector.h
inst/include/Rcpp/api/meat/as.h
inst/include/Rcpp/api/meat/export.h
inst/include/Rcpp/api/meat/is.h
inst/include/Rcpp/api/meat/meat.h
inst/include/Rcpp/api/meat/module/Module.h
inst/include/Rcpp/api/meat/protection.h
inst/include/Rcpp/api/meat/proxy.h
inst/include/Rcpp/api/meat/wrap.h
inst/include/Rcpp/as.h
inst/include/Rcpp/barrier.h
inst/include/Rcpp/clone.h
inst/include/Rcpp/complex.h
inst/include/Rcpp/config.h
inst/include/Rcpp/exceptions.h
inst/include/Rcpp/generated/DataFrame_generated.h
inst/include/Rcpp/generated/DottedPair__ctors.h
inst/include/Rcpp/generated/Function__operator.h
inst/include/Rcpp/generated/InternalFunctionWithStdFunction_call.h
inst/include/Rcpp/generated/InternalFunction__ctors.h
inst/include/Rcpp/generated/Language__ctors.h
inst/include/Rcpp/generated/Pairlist__ctors.h
inst/include/Rcpp/generated/Vector__create.h
inst/include/Rcpp/generated/grow__pairlist.h
inst/include/Rcpp/grow.h
inst/include/Rcpp/hash/IndexHash.h
inst/include/Rcpp/hash/SelfHash.h
inst/include/Rcpp/hash/hash.h
inst/include/Rcpp/internal/Exporter.h
inst/include/Rcpp/internal/GreedyVector.h
inst/include/Rcpp/internal/ListInitialization.h
inst/include/Rcpp/internal/NAComparator.h
inst/include/Rcpp/internal/NAEquals.h
inst/include/Rcpp/internal/Proxy_Iterator.h
inst/include/Rcpp/internal/SEXP_Iterator.h
inst/include/Rcpp/internal/caster.h
inst/include/Rcpp/internal/converter.h
inst/include/Rcpp/internal/export.h
inst/include/Rcpp/internal/na.h
inst/include/Rcpp/internal/r_coerce.h
inst/include/Rcpp/internal/r_vector.h
inst/include/Rcpp/internal/wrap.h
inst/include/Rcpp/internal/wrap_end.h
inst/include/Rcpp/iostream/Rstreambuf.h
inst/include/Rcpp/is.h
inst/include/Rcpp/lang.h
inst/include/Rcpp/longlong.h
inst/include/Rcpp/macros/cat.hpp
inst/include/Rcpp/macros/config.hpp
inst/include/Rcpp/macros/debug.h
inst/include/Rcpp/macros/dispatch.h
inst/include/Rcpp/macros/interface.h
inst/include/Rcpp/macros/macros.h
inst/include/Rcpp/macros/module.h
inst/include/Rcpp/macros/traits.h
inst/include/Rcpp/macros/unroll.h
inst/include/Rcpp/macros/xp.h
inst/include/Rcpp/module/CppFunction.h
inst/include/Rcpp/module/Module.h
inst/include/Rcpp/module/Module_Add_Property.h
inst/include/Rcpp/module/Module_Field.h
inst/include/Rcpp/module/Module_Property.h
inst/include/Rcpp/module/Module_generated_Constructor.h
inst/include/Rcpp/module/Module_generated_CppFunction.h
inst/include/Rcpp/module/Module_generated_CppMethod.h
inst/include/Rcpp/module/Module_generated_Factory.h
inst/include/Rcpp/module/Module_generated_Pointer_CppMethod.h
inst/include/Rcpp/module/Module_generated_Pointer_method.h
inst/include/Rcpp/module/Module_generated_class_constructor.h
inst/include/Rcpp/module/Module_generated_class_factory.h
inst/include/Rcpp/module/Module_generated_class_signature.h
inst/include/Rcpp/module/Module_generated_ctor_signature.h
inst/include/Rcpp/module/Module_generated_function.h
inst/include/Rcpp/module/Module_generated_get_signature.h
inst/include/Rcpp/module/Module_generated_method.h
inst/include/Rcpp/module/class.h
inst/include/Rcpp/module/class_Base.h
inst/include/Rcpp/module/get_return_type.h
inst/include/Rcpp/platform/compiler.h
inst/include/Rcpp/platform/solaris.h
inst/include/Rcpp/print.h
inst/include/Rcpp/protection/Armor.h
inst/include/Rcpp/protection/Shelter.h
inst/include/Rcpp/protection/Shield.h
inst/include/Rcpp/protection/protection.h
inst/include/Rcpp/proxy/AttributeProxy.h
inst/include/Rcpp/proxy/Binding.h
inst/include/Rcpp/proxy/DottedPairProxy.h
inst/include/Rcpp/proxy/FieldProxy.h
inst/include/Rcpp/proxy/GenericProxy.h
inst/include/Rcpp/proxy/NamesProxy.h
inst/include/Rcpp/proxy/ProtectedProxy.h
inst/include/Rcpp/proxy/RObjectMethods.h
inst/include/Rcpp/proxy/SlotProxy.h
inst/include/Rcpp/proxy/TagProxy.h
inst/include/Rcpp/proxy/proxy.h
inst/include/Rcpp/r/headers.h
inst/include/Rcpp/r_cast.h
inst/include/Rcpp/routines.h
inst/include/Rcpp/sprintf.h
inst/include/Rcpp/stats/beta.h
inst/include/Rcpp/stats/binom.h
inst/include/Rcpp/stats/cauchy.h
inst/include/Rcpp/stats/chisq.h
inst/include/Rcpp/stats/dpq/dpq.h
inst/include/Rcpp/stats/dpq/macros.h
inst/include/Rcpp/stats/exp.h
inst/include/Rcpp/stats/f.h
inst/include/Rcpp/stats/gamma.h
inst/include/Rcpp/stats/geom.h
inst/include/Rcpp/stats/hyper.h
inst/include/Rcpp/stats/lnorm.h
inst/include/Rcpp/stats/logis.h
inst/include/Rcpp/stats/nbeta.h
inst/include/Rcpp/stats/nbinom.h
inst/include/Rcpp/stats/nbinom_mu.h
inst/include/Rcpp/stats/nchisq.h
inst/include/Rcpp/stats/nf.h
inst/include/Rcpp/stats/norm.h
inst/include/Rcpp/stats/nt.h
inst/include/Rcpp/stats/pois.h
inst/include/Rcpp/stats/random/random.h
inst/include/Rcpp/stats/random/rbeta.h
inst/include/Rcpp/stats/random/rbinom.h
inst/include/Rcpp/stats/random/rcauchy.h
inst/include/Rcpp/stats/random/rchisq.h
inst/include/Rcpp/stats/random/rexp.h
inst/include/Rcpp/stats/random/rf.h
inst/include/Rcpp/stats/random/rgamma.h
inst/include/Rcpp/stats/random/rgeom.h
inst/include/Rcpp/stats/random/rhyper.h
inst/include/Rcpp/stats/random/rlnorm.h
inst/include/Rcpp/stats/random/rlogis.h
inst/include/Rcpp/stats/random/rnbinom.h
inst/include/Rcpp/stats/random/rnbinom_mu.h
inst/include/Rcpp/stats/random/rnchisq.h
inst/include/Rcpp/stats/random/rnorm.h
inst/include/Rcpp/stats/random/rpois.h
inst/include/Rcpp/stats/random/rsignrank.h
inst/include/Rcpp/stats/random/rt.h
inst/include/Rcpp/stats/random/runif.h
inst/include/Rcpp/stats/random/rweibull.h
inst/include/Rcpp/stats/random/rwilcox.h
inst/include/Rcpp/stats/stats.h
inst/include/Rcpp/stats/t.h
inst/include/Rcpp/stats/unif.h
inst/include/Rcpp/stats/weibull.h
inst/include/Rcpp/storage/NoProtectStorage.h
inst/include/Rcpp/storage/PreserveStorage.h
inst/include/Rcpp/storage/storage.h
inst/include/Rcpp/sugar/Range.h
inst/include/Rcpp/sugar/block/SugarBlock_1.h
inst/include/Rcpp/sugar/block/SugarBlock_2.h
inst/include/Rcpp/sugar/block/SugarBlock_3.h
inst/include/Rcpp/sugar/block/SugarMath.h
inst/include/Rcpp/sugar/block/Vectorized_Math.h
inst/include/Rcpp/sugar/block/block.h
inst/include/Rcpp/sugar/functions/Lazy.h
inst/include/Rcpp/sugar/functions/all.h
inst/include/Rcpp/sugar/functions/any.h
inst/include/Rcpp/sugar/functions/clamp.h
inst/include/Rcpp/sugar/functions/complex.h
inst/include/Rcpp/sugar/functions/cumsum.h
inst/include/Rcpp/sugar/functions/diff.h
inst/include/Rcpp/sugar/functions/duplicated.h
inst/include/Rcpp/sugar/functions/functions.h
inst/include/Rcpp/sugar/functions/head.h
inst/include/Rcpp/sugar/functions/ifelse.h
inst/include/Rcpp/sugar/functions/is_finite.h
inst/include/Rcpp/sugar/functions/is_infinite.h
inst/include/Rcpp/sugar/functions/is_na.h
inst/include/Rcpp/sugar/functions/is_nan.h
inst/include/Rcpp/sugar/functions/lapply.h
inst/include/Rcpp/sugar/functions/mapply.h
inst/include/Rcpp/sugar/functions/mapply/mapply_2.h
inst/include/Rcpp/sugar/functions/mapply/mapply_3.h
inst/include/Rcpp/sugar/functions/match.h
inst/include/Rcpp/sugar/functions/math.h
inst/include/Rcpp/sugar/functions/max.h
inst/include/Rcpp/sugar/functions/mean.h
inst/include/Rcpp/sugar/functions/min.h
inst/include/Rcpp/sugar/functions/na_omit.h
inst/include/Rcpp/sugar/functions/pmax.h
inst/include/Rcpp/sugar/functions/pmin.h
inst/include/Rcpp/sugar/functions/pow.h
inst/include/Rcpp/sugar/functions/range.h
inst/include/Rcpp/sugar/functions/rep.h
inst/include/Rcpp/sugar/functions/rep_each.h
inst/include/Rcpp/sugar/functions/rep_len.h
inst/include/Rcpp/sugar/functions/rev.h
inst/include/Rcpp/sugar/functions/sapply.h
inst/include/Rcpp/sugar/functions/sd.h
inst/include/Rcpp/sugar/functions/self_match.h
inst/include/Rcpp/sugar/functions/seq_along.h
inst/include/Rcpp/sugar/functions/setdiff.h
inst/include/Rcpp/sugar/functions/sign.h
inst/include/Rcpp/sugar/functions/strings/collapse.h
inst/include/Rcpp/sugar/functions/strings/strings.h
inst/include/Rcpp/sugar/functions/sum.h
inst/include/Rcpp/sugar/functions/table.h
inst/include/Rcpp/sugar/functions/tail.h
inst/include/Rcpp/sugar/functions/unique.h
inst/include/Rcpp/sugar/functions/var.h
inst/include/Rcpp/sugar/functions/which_max.h
inst/include/Rcpp/sugar/functions/which_min.h
inst/include/Rcpp/sugar/logical/SingleLogicalResult.h
inst/include/Rcpp/sugar/logical/and.h
inst/include/Rcpp/sugar/logical/can_have_na.h
inst/include/Rcpp/sugar/logical/is.h
inst/include/Rcpp/sugar/logical/logical.h
inst/include/Rcpp/sugar/logical/not.h
inst/include/Rcpp/sugar/logical/or.h
inst/include/Rcpp/sugar/matrix/as_vector.h
inst/include/Rcpp/sugar/matrix/col.h
inst/include/Rcpp/sugar/matrix/diag.h
inst/include/Rcpp/sugar/matrix/lower_tri.h
inst/include/Rcpp/sugar/matrix/matrix_functions.h
inst/include/Rcpp/sugar/matrix/outer.h
inst/include/Rcpp/sugar/matrix/row.h
inst/include/Rcpp/sugar/matrix/tools.h
inst/include/Rcpp/sugar/matrix/upper_tri.h
inst/include/Rcpp/sugar/nona/nona.h
inst/include/Rcpp/sugar/operators/Comparator.h
inst/include/Rcpp/sugar/operators/Comparator_With_One_Value.h
inst/include/Rcpp/sugar/operators/divides.h
inst/include/Rcpp/sugar/operators/logical_operators__Vector__Vector.h
inst/include/Rcpp/sugar/operators/logical_operators__Vector__primitive.h
inst/include/Rcpp/sugar/operators/minus.h
inst/include/Rcpp/sugar/operators/not.h
inst/include/Rcpp/sugar/operators/operators.h
inst/include/Rcpp/sugar/operators/plus.h
inst/include/Rcpp/sugar/operators/r_binary_op.h
inst/include/Rcpp/sugar/operators/times.h
inst/include/Rcpp/sugar/operators/unary_minus.h
inst/include/Rcpp/sugar/sets.h
inst/include/Rcpp/sugar/sugar.h
inst/include/Rcpp/sugar/sugar_forward.h
inst/include/Rcpp/sugar/tools/iterator.h
inst/include/Rcpp/sugar/undoRmath.h
inst/include/Rcpp/traits/char_type.h
inst/include/Rcpp/traits/enable_if.h
inst/include/Rcpp/traits/expands_to_logical.h
inst/include/Rcpp/traits/get_na.h
inst/include/Rcpp/traits/has_iterator.h
inst/include/Rcpp/traits/has_na.h
inst/include/Rcpp/traits/if_.h
inst/include/Rcpp/traits/init_type.h
inst/include/Rcpp/traits/integral_constant.h
inst/include/Rcpp/traits/is_bool.h
inst/include/Rcpp/traits/is_const.h
inst/include/Rcpp/traits/is_convertible.h
inst/include/Rcpp/traits/is_eigen_base.h
inst/include/Rcpp/traits/is_finite.h
inst/include/Rcpp/traits/is_infinite.h
inst/include/Rcpp/traits/is_module_object.h
inst/include/Rcpp/traits/is_na.h
inst/include/Rcpp/traits/is_nan.h
inst/include/Rcpp/traits/is_pointer.h
inst/include/Rcpp/traits/is_primitive.h
inst/include/Rcpp/traits/is_reference.h
inst/include/Rcpp/traits/is_sugar_expression.h
inst/include/Rcpp/traits/is_trivial.h
inst/include/Rcpp/traits/is_wide_string.h
inst/include/Rcpp/traits/longlong.h
inst/include/Rcpp/traits/matrix_interface.h
inst/include/Rcpp/traits/module_wrap_traits.h
inst/include/Rcpp/traits/named_object.h
inst/include/Rcpp/traits/num2type.h
inst/include/Rcpp/traits/r_sexptype_traits.h
inst/include/Rcpp/traits/r_type_traits.h
inst/include/Rcpp/traits/remove_const.h
inst/include/Rcpp/traits/remove_const_and_reference.h
inst/include/Rcpp/traits/remove_reference.h
inst/include/Rcpp/traits/result_of.h
inst/include/Rcpp/traits/same_type.h
inst/include/Rcpp/traits/storage_type.h
inst/include/Rcpp/traits/traits.h
inst/include/Rcpp/traits/un_pointer.h
inst/include/Rcpp/traits/wrap_type_traits.h
inst/include/Rcpp/utils/tinyformat.h
inst/include/Rcpp/vector/00_forward_Vector.h
inst/include/Rcpp/vector/00_forward_proxy.h
inst/include/Rcpp/vector/ChildVector.h
inst/include/Rcpp/vector/DimNameProxy.h
inst/include/Rcpp/vector/LazyVector.h
inst/include/Rcpp/vector/ListOf.h
inst/include/Rcpp/vector/Matrix.h
inst/include/Rcpp/vector/MatrixBase.h
inst/include/Rcpp/vector/MatrixColumn.h
inst/include/Rcpp/vector/MatrixRow.h
inst/include/Rcpp/vector/RangeIndexer.h
inst/include/Rcpp/vector/SubMatrix.h
inst/include/Rcpp/vector/Subsetter.h
inst/include/Rcpp/vector/Vector.h
inst/include/Rcpp/vector/VectorBase.h
inst/include/Rcpp/vector/const_generic_proxy.h
inst/include/Rcpp/vector/const_string_proxy.h
inst/include/Rcpp/vector/converter.h
inst/include/Rcpp/vector/generic_proxy.h
inst/include/Rcpp/vector/instantiation.h
inst/include/Rcpp/vector/no_init.h
inst/include/Rcpp/vector/proxy.h
inst/include/Rcpp/vector/string_proxy.h
inst/include/Rcpp/vector/swap.h
inst/include/Rcpp/vector/traits.h
inst/include/Rcpp/vector/vector_from_string.h
inst/include/RcppCommon.h
inst/include/biodyn-logistic.h
inst/include/biodyn-logistic.h~
inst/include/cppad/CMakeLists.txt
inst/include/cppad/COPYING
inst/include/cppad/CheckNumericType.h
inst/include/cppad/CheckSimpleVector.h
inst/include/cppad/CppAD.h
inst/include/cppad/CppAD_vector.h
inst/include/cppad/ErrorHandler.h
inst/include/cppad/LuFactor.h
inst/include/cppad/LuInvert.h
inst/include/cppad/LuSolve.h
inst/include/cppad/NearEqual.h
inst/include/cppad/OdeErrControl.h
inst/include/cppad/OdeGear.h
inst/include/cppad/OdeGearControl.h
inst/include/cppad/Poly.h
inst/include/cppad/PowInt.h
inst/include/cppad/RombergMul.h
inst/include/cppad/RombergOne.h
inst/include/cppad/Rosen34.h
inst/include/cppad/Runge45.h
inst/include/cppad/SpeedTest.h
inst/include/cppad/TrackNewDel.h
inst/include/cppad/base_require.hpp
inst/include/cppad/check_numeric_type.hpp
inst/include/cppad/check_simple_vector.hpp
inst/include/cppad/configure.hpp
inst/include/cppad/configure.hpp.in
inst/include/cppad/cppad.hpp
inst/include/cppad/elapsed_seconds.hpp
inst/include/cppad/error_handler.hpp
inst/include/cppad/example/base_adolc.hpp
inst/include/cppad/example/cppad_eigen.hpp
inst/include/cppad/example/eigen_plugin.hpp
inst/include/cppad/example/matrix_mul.hpp
inst/include/cppad/index_sort.hpp
inst/include/cppad/ipopt/solve.hpp
inst/include/cppad/ipopt/solve_callback.hpp
inst/include/cppad/ipopt/solve_result.hpp
inst/include/cppad/local/abort_recording.hpp
inst/include/cppad/local/abs.hpp
inst/include/cppad/local/abs_op.hpp
inst/include/cppad/local/acos_op.hpp
inst/include/cppad/local/ad.hpp
inst/include/cppad/local/ad_assign.hpp
inst/include/cppad/local/ad_binary.hpp
inst/include/cppad/local/ad_ctor.hpp
inst/include/cppad/local/ad_fun.hpp
inst/include/cppad/local/ad_io.hpp
inst/include/cppad/local/ad_tape.hpp
inst/include/cppad/local/ad_valued.hpp
inst/include/cppad/local/add.hpp
inst/include/cppad/local/add_eq.hpp
inst/include/cppad/local/add_op.hpp
inst/include/cppad/local/arithmetic.hpp
inst/include/cppad/local/asin_op.hpp
inst/include/cppad/local/atan2.hpp
inst/include/cppad/local/atan_op.hpp
inst/include/cppad/local/atomic_base.hpp
inst/include/cppad/local/base_complex.hpp
inst/include/cppad/local/base_cond_exp.hpp
inst/include/cppad/local/base_double.hpp
inst/include/cppad/local/base_float.hpp
inst/include/cppad/local/base_std_math.hpp
inst/include/cppad/local/bender_quad.hpp
inst/include/cppad/local/bool_fun.hpp
inst/include/cppad/local/bool_valued.hpp
inst/include/cppad/local/capacity_order.hpp
inst/include/cppad/local/checkpoint.hpp
inst/include/cppad/local/color_general.hpp
inst/include/cppad/local/comp_op.hpp
inst/include/cppad/local/compare.hpp
inst/include/cppad/local/compute_assign.hpp
inst/include/cppad/local/cond_exp.hpp
inst/include/cppad/local/cond_op.hpp
inst/include/cppad/local/config.h.in
inst/include/cppad/local/convert.hpp
inst/include/cppad/local/cos_op.hpp
inst/include/cppad/local/cosh_op.hpp
inst/include/cppad/local/cppad_assert.hpp
inst/include/cppad/local/cppad_colpack.cpp
inst/include/cppad/local/cppad_colpack.hpp
inst/include/cppad/local/cskip_op.hpp
inst/include/cppad/local/csum_op.hpp
inst/include/cppad/local/declare_ad.hpp
inst/include/cppad/local/define.hpp
inst/include/cppad/local/dependent.hpp
inst/include/cppad/local/discrete.hpp
inst/include/cppad/local/discrete_op.hpp
inst/include/cppad/local/div.hpp
inst/include/cppad/local/div_eq.hpp
inst/include/cppad/local/div_op.hpp
inst/include/cppad/local/drivers.hpp
inst/include/cppad/local/epsilon.hpp
inst/include/cppad/local/equal_op_seq.hpp
inst/include/cppad/local/erf.hpp
inst/include/cppad/local/exp_op.hpp
inst/include/cppad/local/for_jac_sweep.hpp
inst/include/cppad/local/for_one.hpp
inst/include/cppad/local/for_sparse_jac.hpp
inst/include/cppad/local/for_two.hpp
inst/include/cppad/local/forward.hpp
inst/include/cppad/local/forward0sweep.hpp
inst/include/cppad/local/forward1sweep.hpp
inst/include/cppad/local/forward2sweep.hpp
inst/include/cppad/local/fun_check.hpp
inst/include/cppad/local/fun_construct.hpp
inst/include/cppad/local/fun_eval.hpp
inst/include/cppad/local/hash_code.hpp
inst/include/cppad/local/hessian.hpp
inst/include/cppad/local/identical.hpp
inst/include/cppad/local/independent.hpp
inst/include/cppad/local/integer.hpp
inst/include/cppad/local/jacobian.hpp
inst/include/cppad/local/limits.hpp
inst/include/cppad/local/load_op.hpp
inst/include/cppad/local/log_op.hpp
inst/include/cppad/local/lu_ratio.hpp
inst/include/cppad/local/math_other.hpp
inst/include/cppad/local/mul.hpp
inst/include/cppad/local/mul_eq.hpp
inst/include/cppad/local/mul_op.hpp
inst/include/cppad/local/near_equal_ext.hpp
inst/include/cppad/local/num_skip.hpp
inst/include/cppad/local/old_atomic.hpp
inst/include/cppad/local/omp_max_thread.hpp
inst/include/cppad/local/op.hpp
inst/include/cppad/local/op_code.hpp
inst/include/cppad/local/opt_val_hes.hpp
inst/include/cppad/local/optimize.hpp
inst/include/cppad/local/ordered.hpp
inst/include/cppad/local/par_var.hpp
inst/include/cppad/local/parallel_ad.hpp
inst/include/cppad/local/parameter_op.hpp
inst/include/cppad/local/player.hpp
inst/include/cppad/local/pod_vector.hpp
inst/include/cppad/local/pow.hpp
inst/include/cppad/local/pow_op.hpp
inst/include/cppad/local/print_for.hpp
inst/include/cppad/local/print_op.hpp
inst/include/cppad/local/prototype_op.hpp
inst/include/cppad/local/recorder.hpp
inst/include/cppad/local/rev_hes_sweep.hpp
inst/include/cppad/local/rev_jac_sweep.hpp
inst/include/cppad/local/rev_one.hpp
inst/include/cppad/local/rev_sparse_hes.hpp
inst/include/cppad/local/rev_sparse_jac.hpp
inst/include/cppad/local/rev_two.hpp
inst/include/cppad/local/reverse.hpp
inst/include/cppad/local/reverse_sweep.hpp
inst/include/cppad/local/sign.hpp
inst/include/cppad/local/sign_op.hpp
inst/include/cppad/local/sin_op.hpp
inst/include/cppad/local/sinh_op.hpp
inst/include/cppad/local/sparse.hpp
inst/include/cppad/local/sparse_binary_op.hpp
inst/include/cppad/local/sparse_hessian.hpp
inst/include/cppad/local/sparse_jacobian.hpp
inst/include/cppad/local/sparse_list.hpp
inst/include/cppad/local/sparse_pack.hpp
inst/include/cppad/local/sparse_pattern.hpp
inst/include/cppad/local/sparse_set.hpp
inst/include/cppad/local/sparse_unary_op.hpp
inst/include/cppad/local/sqrt_op.hpp
inst/include/cppad/local/std_math_ad.hpp
inst/include/cppad/local/std_set.hpp
inst/include/cppad/local/store_op.hpp
inst/include/cppad/local/sub.hpp
inst/include/cppad/local/sub_eq.hpp
inst/include/cppad/local/sub_op.hpp
inst/include/cppad/local/tan_op.hpp
inst/include/cppad/local/tanh_op.hpp
inst/include/cppad/local/tape_link.hpp
inst/include/cppad/local/test_vector.hpp
inst/include/cppad/local/testvector.hpp
inst/include/cppad/local/unary_minus.hpp
inst/include/cppad/local/unary_plus.hpp
inst/include/cppad/local/undef.hpp
inst/include/cppad/local/user_ad.hpp
inst/include/cppad/local/value.hpp
inst/include/cppad/local/var2par.hpp
inst/include/cppad/local/vec_ad.hpp
inst/include/cppad/lu_factor.hpp
inst/include/cppad/lu_invert.hpp
inst/include/cppad/lu_solve.hpp
inst/include/cppad/memory_leak.hpp
inst/include/cppad/nan.hpp
inst/include/cppad/near_equal.hpp
inst/include/cppad/ode_err_control.hpp
inst/include/cppad/ode_gear.hpp
inst/include/cppad/ode_gear_control.hpp
inst/include/cppad/omp_alloc.hpp
inst/include/cppad/poly.hpp
inst/include/cppad/pow_int.hpp
inst/include/cppad/romberg_mul.hpp
inst/include/cppad/romberg_one.hpp
inst/include/cppad/rosen_34.hpp
inst/include/cppad/runge_45.hpp
inst/include/cppad/speed/det_33.hpp
inst/include/cppad/speed/det_by_lu.hpp
inst/include/cppad/speed/det_by_minor.hpp
inst/include/cppad/speed/det_grad_33.hpp
inst/include/cppad/speed/det_of_minor.hpp
inst/include/cppad/speed/mat_sum_sq.hpp
inst/include/cppad/speed/ode_evaluate.hpp
inst/include/cppad/speed/sparse_hes_fun.hpp
inst/include/cppad/speed/sparse_jac_fun.hpp
inst/include/cppad/speed/uniform_01.hpp
inst/include/cppad/speed_test.hpp
inst/include/cppad/thread_alloc.hpp
inst/include/cppad/time_test.hpp
inst/include/cppad/track_new_del.hpp
inst/include/cppad/vector.hpp
inst/include/doxygen/Examples.h
inst/include/fwdBiol.h
inst/include/fwdControl.h
inst/include/fwdSR.h
inst/include/operating_model.h
inst/src/.gitignore
inst/src/biodyn-fwd.cpp
inst/src/biodyn-logistic.R
inst/src/biodyn-logistic.cpp
inst/src/bounds.R
inst/src/mng.cpp
inst/src/mng.cpp~
inst/src/q.cpp
inst/src/sp.cpp
inst/src/sp.hpp
inst/tpl/.gitignore
inst/tpl/bash.txt
inst/tpl/bounds.cpp
inst/tpl/dnorm.cpp
inst/tpl/dnorm.hpp
inst/tpl/nr.cpp
inst/tpl/pella
inst/tpl/pella.cpp
inst/tpl/pella.def
inst/tpl/pella.htp
inst/tpl/pella.tpl
inst/tpl/pella.tpl~
inst/tpl/pellaDLL.cpp
inst/tpl/pellaDLL.htp
inst/tpl/pellaRe.tpl
inst/tpl/pellaV1.tpl
man/K.Rd man/as.Rd man/biodyn-class.Rd man/biodyn-package.Rd man/biodyn.Rd man/biodyns.Rd man/bmsy.Rd man/boot.Rd man/control-set.Rd man/control.Rd man/controlFn.Rd man/fit.Rd man/fmsy.Rd man/fwd.Rd man/hcr.Rd man/hcrParam.Rd man/hcrPlot.Rd man/is.biodyn.Rd man/kobe.Rd man/msy.Rd man/mvn.Rd man/plot.Rd man/plotEql.Rd man/plotJack.Rd man/plotMSE.Rd man/plotPrd.Rd man/power.Rd man/priorFn.Rd man/profile.Rd man/randJack.Rd man/refpts.Rd man/runMSE.Rd man/setControl.Rd man/setParams.Rd man/sim.Rd man/sp.Rd man/tac.Rd man/tseries.Rd man/xval.Rd
src/.gitignore
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/biodyn-logistic.cpp
src/biodyn-logistic.h
src/biodyn-logistic.h~
stuff/bugs/conn.bug
stuff/bugs/missing-man.R stuff/bugs/sa-biodyn.Rmd
stuff/data/asp.RData
stuff/data/bds.RData
stuff/data/sims.RData
stuff/docs/67.pdf stuff/docs/bootstrap.pdf stuff/docs/gavaris.pdf stuff/docs/jackboot.pdf
stuff/inputs/admodel.cov
stuff/inputs/admodel.dep
stuff/inputs/admodel.hes
stuff/inputs/bnd.txt
stuff/inputs/dgs2
stuff/inputs/diags
stuff/inputs/eigv.rpt
stuff/inputs/fmin.log
stuff/inputs/lls.txt
stuff/inputs/lpbbmsy.plt
stuff/inputs/lpbk.plt
stuff/inputs/lpbmsy.plt
stuff/inputs/lpbnow.plt
stuff/inputs/lpbratio.plt
stuff/inputs/lpcmsy.plt
stuff/inputs/lpffmsy.plt
stuff/inputs/lpfmsy.plt
stuff/inputs/lpfnow.plt
stuff/inputs/lpfr.plt
stuff/inputs/lpfratio.plt
stuff/inputs/lpk.plt
stuff/inputs/lpmsy.plt
stuff/inputs/lpr.plt
stuff/inputs/lpslopeb.plt
stuff/inputs/lpslopef.plt
stuff/inputs/mcmc_bio.csv
stuff/inputs/mcmc_par.csv
stuff/inputs/pella.bar
stuff/inputs/pella.cor
stuff/inputs/pella.ctl
stuff/inputs/pella.dat
stuff/inputs/pella.eva
stuff/inputs/pella.log
stuff/inputs/pella.par
stuff/inputs/pella.prf
stuff/inputs/pella.prr
stuff/inputs/pella.rep
stuff/inputs/pella.std
stuff/inputs/prr.txt
stuff/inputs/variance
stuff/tests/F.Rmd stuff/tests/FLCpp-logistic.R stuff/tests/dataComponents.R stuff/tests/differential.Rmd stuff/tests/jk.R stuff/tests/mcHCR.R
stuff/vignettes/.gitignore
stuff/vignettes/biodyn.Rmd
stuff/vignettes/biodyn.html
stuff/vignettes/biodyn.pdf
stuff/vignettes/biodyn.pdf.asis
stuff/vignettes/bootstrap.Rmd stuff/vignettes/jackknife.Rmd stuff/vignettes/jackknife.pdf vignettes/biodyn.R vignettes/biodyn.Rmd vignettes/biodyn.pdf vignettes/jackknife.R vignettes/jackknife.Rmd vignettes/jackknife.pdf
laurieKell/biodyn documentation built on May 20, 2019, 7:58 p.m.