Files in laurieKell/biodyn
Biomass Dynamic Model

.Rbuildignore
.Rbuildignore~
.gitignore
BinaryFiles
DESCRIPTION
DESCRIPTION~
NAMESPACE
R/RcppExports.R R/bdm-methods.R R/biodyn-F.R R/biodyn-FLQuantiles.R R/biodyn-accessors.R R/biodyn-admb.R R/biodyn-boot.R R/biodyn-class.R R/biodyn-coerce.R R/biodyn-combine.R R/biodyn-constructors.R R/biodyn-control.R R/biodyn-cpp.R R/biodyn-delta.R R/biodyn-diags.R R/biodyn-fwd.R R/biodyn-generic.R R/biodyn-ggplotFL.R R/biodyn-hcr.R R/biodyn-hst.R R/biodyn-jackRand.R R/biodyn-jackSummary.R R/biodyn-kobe.R R/biodyn-ll.R R/biodyn-mcmc.R R/biodyn-methods.R R/biodyn-mng.R R/biodyn-mse-application.R R/biodyn-mse.R R/biodyn-msy.R R/biodyn-mvn.R R/biodyn-oem.R R/biodyn-pella.R R/biodyn-pid.R R/biodyn-plots.R R/biodyn-priors.R R/biodyn-profile.R R/biodyn-proj.R R/biodyn-stars.R R/biodyn-tseries.R R/biodyn-xval.R R/bounds.R R/plotComp.R R/sbt-mse.R README.md
biodyn.Rproj
collate.R~
inst/bin/linux/pella
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inst/include/cppad/local/independent.hpp
inst/include/cppad/local/integer.hpp
inst/include/cppad/local/jacobian.hpp
inst/include/cppad/local/limits.hpp
inst/include/cppad/local/load_op.hpp
inst/include/cppad/local/log_op.hpp
inst/include/cppad/local/lu_ratio.hpp
inst/include/cppad/local/math_other.hpp
inst/include/cppad/local/mul.hpp
inst/include/cppad/local/mul_eq.hpp
inst/include/cppad/local/mul_op.hpp
inst/include/cppad/local/near_equal_ext.hpp
inst/include/cppad/local/num_skip.hpp
inst/include/cppad/local/old_atomic.hpp
inst/include/cppad/local/omp_max_thread.hpp
inst/include/cppad/local/op.hpp
inst/include/cppad/local/op_code.hpp
inst/include/cppad/local/opt_val_hes.hpp
inst/include/cppad/local/optimize.hpp
inst/include/cppad/local/ordered.hpp
inst/include/cppad/local/par_var.hpp
inst/include/cppad/local/parallel_ad.hpp
inst/include/cppad/local/parameter_op.hpp
inst/include/cppad/local/player.hpp
inst/include/cppad/local/pod_vector.hpp
inst/include/cppad/local/pow.hpp
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inst/include/cppad/local/print_for.hpp
inst/include/cppad/local/print_op.hpp
inst/include/cppad/local/prototype_op.hpp
inst/include/cppad/local/recorder.hpp
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inst/include/cppad/local/rev_jac_sweep.hpp
inst/include/cppad/local/rev_one.hpp
inst/include/cppad/local/rev_sparse_hes.hpp
inst/include/cppad/local/rev_sparse_jac.hpp
inst/include/cppad/local/rev_two.hpp
inst/include/cppad/local/reverse.hpp
inst/include/cppad/local/reverse_sweep.hpp
inst/include/cppad/local/sign.hpp
inst/include/cppad/local/sign_op.hpp
inst/include/cppad/local/sin_op.hpp
inst/include/cppad/local/sinh_op.hpp
inst/include/cppad/local/sparse.hpp
inst/include/cppad/local/sparse_binary_op.hpp
inst/include/cppad/local/sparse_hessian.hpp
inst/include/cppad/local/sparse_jacobian.hpp
inst/include/cppad/local/sparse_list.hpp
inst/include/cppad/local/sparse_pack.hpp
inst/include/cppad/local/sparse_pattern.hpp
inst/include/cppad/local/sparse_set.hpp
inst/include/cppad/local/sparse_unary_op.hpp
inst/include/cppad/local/sqrt_op.hpp
inst/include/cppad/local/std_math_ad.hpp
inst/include/cppad/local/std_set.hpp
inst/include/cppad/local/store_op.hpp
inst/include/cppad/local/sub.hpp
inst/include/cppad/local/sub_eq.hpp
inst/include/cppad/local/sub_op.hpp
inst/include/cppad/local/tan_op.hpp
inst/include/cppad/local/tanh_op.hpp
inst/include/cppad/local/tape_link.hpp
inst/include/cppad/local/test_vector.hpp
inst/include/cppad/local/testvector.hpp
inst/include/cppad/local/unary_minus.hpp
inst/include/cppad/local/unary_plus.hpp
inst/include/cppad/local/undef.hpp
inst/include/cppad/local/user_ad.hpp
inst/include/cppad/local/value.hpp
inst/include/cppad/local/var2par.hpp
inst/include/cppad/local/vec_ad.hpp
inst/include/cppad/lu_factor.hpp
inst/include/cppad/lu_invert.hpp
inst/include/cppad/lu_solve.hpp
inst/include/cppad/memory_leak.hpp
inst/include/cppad/nan.hpp
inst/include/cppad/near_equal.hpp
inst/include/cppad/ode_err_control.hpp
inst/include/cppad/ode_gear.hpp
inst/include/cppad/ode_gear_control.hpp
inst/include/cppad/omp_alloc.hpp
inst/include/cppad/poly.hpp
inst/include/cppad/pow_int.hpp
inst/include/cppad/romberg_mul.hpp
inst/include/cppad/romberg_one.hpp
inst/include/cppad/rosen_34.hpp
inst/include/cppad/runge_45.hpp
inst/include/cppad/speed/det_33.hpp
inst/include/cppad/speed/det_by_lu.hpp
inst/include/cppad/speed/det_by_minor.hpp
inst/include/cppad/speed/det_grad_33.hpp
inst/include/cppad/speed/det_of_minor.hpp
inst/include/cppad/speed/mat_sum_sq.hpp
inst/include/cppad/speed/ode_evaluate.hpp
inst/include/cppad/speed/sparse_hes_fun.hpp
inst/include/cppad/speed/sparse_jac_fun.hpp
inst/include/cppad/speed/uniform_01.hpp
inst/include/cppad/speed_test.hpp
inst/include/cppad/thread_alloc.hpp
inst/include/cppad/time_test.hpp
inst/include/cppad/track_new_del.hpp
inst/include/cppad/vector.hpp
inst/include/doxygen/Examples.h
inst/include/fwdBiol.h
inst/include/fwdControl.h
inst/include/fwdSR.h
inst/include/operating_model.h
inst/src/.gitignore
inst/src/biodyn-fwd.cpp
inst/src/biodyn-logistic.R
inst/src/biodyn-logistic.cpp
inst/src/bounds.R
inst/src/mng.cpp
inst/src/mng.cpp~
inst/src/q.cpp
inst/src/sp.cpp
inst/src/sp.hpp
inst/tpl/.gitignore
inst/tpl/bash.txt
inst/tpl/bounds.cpp
inst/tpl/dnorm.cpp
inst/tpl/dnorm.hpp
inst/tpl/nr.cpp
inst/tpl/pella
inst/tpl/pella.cpp
inst/tpl/pella.def
inst/tpl/pella.htp
inst/tpl/pella.tpl
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inst/tpl/pellaDLL.cpp
inst/tpl/pellaDLL.htp
inst/tpl/pellaRe.tpl
inst/tpl/pellaV1.tpl
man/K.Rd man/as.Rd man/biodyn-class.Rd man/biodyn-package.Rd man/biodyn.Rd man/biodyns.Rd man/bmsy.Rd man/boot.Rd man/control-set.Rd man/control.Rd man/controlFn.Rd man/fit.Rd man/fmsy.Rd man/fwd.Rd man/hcr.Rd man/hcrParam.Rd man/hcrPlot.Rd man/is.biodyn.Rd man/kobe.Rd man/msy.Rd man/mvn.Rd man/plot.Rd man/plotEql.Rd man/plotJack.Rd man/plotMSE.Rd man/plotPrd.Rd man/power.Rd man/priorFn.Rd man/profile.Rd man/randJack.Rd man/refpts.Rd man/runMSE.Rd man/setControl.Rd man/setParams.Rd man/sim.Rd man/sp.Rd man/tac.Rd man/tseries.Rd man/xval.Rd
src/.gitignore
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/biodyn-logistic.cpp
src/biodyn-logistic.h
src/biodyn-logistic.h~
stuff/bugs/conn.bug
stuff/bugs/missing-man.R stuff/bugs/sa-biodyn.Rmd
stuff/data/asp.RData
stuff/data/bds.RData
stuff/data/sims.RData
stuff/docs/67.pdf stuff/docs/bootstrap.pdf stuff/docs/gavaris.pdf stuff/docs/jackboot.pdf
stuff/inputs/admodel.cov
stuff/inputs/admodel.dep
stuff/inputs/admodel.hes
stuff/inputs/bnd.txt
stuff/inputs/dgs2
stuff/inputs/diags
stuff/inputs/eigv.rpt
stuff/inputs/fmin.log
stuff/inputs/lls.txt
stuff/inputs/lpbbmsy.plt
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stuff/inputs/lpr.plt
stuff/inputs/lpslopeb.plt
stuff/inputs/lpslopef.plt
stuff/inputs/mcmc_bio.csv
stuff/inputs/mcmc_par.csv
stuff/inputs/pella.bar
stuff/inputs/pella.cor
stuff/inputs/pella.ctl
stuff/inputs/pella.dat
stuff/inputs/pella.eva
stuff/inputs/pella.log
stuff/inputs/pella.par
stuff/inputs/pella.prf
stuff/inputs/pella.prr
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stuff/inputs/pella.std
stuff/inputs/prr.txt
stuff/inputs/variance
stuff/tests/F.Rmd stuff/tests/FLCpp-logistic.R stuff/tests/dataComponents.R stuff/tests/differential.Rmd stuff/tests/jk.R stuff/tests/mcHCR.R
stuff/vignettes/.gitignore
stuff/vignettes/biodyn.Rmd
stuff/vignettes/biodyn.html
stuff/vignettes/biodyn.pdf
stuff/vignettes/biodyn.pdf.asis
stuff/vignettes/bootstrap.Rmd stuff/vignettes/jackknife.Rmd stuff/vignettes/jackknife.pdf vignettes/biodyn.R vignettes/biodyn.Rmd vignettes/biodyn.pdf vignettes/jackknife.R vignettes/jackknife.Rmd vignettes/jackknife.pdf
laurieKell/biodyn documentation built on May 21, 2017, 8:36 a.m.