profile: profile

In laurieKell/biodyn: Biomass Dynamic Model

Description

Profiles biodyn

Usage

## S4 method for signature 'biodyn'
profile(fitted, which, index = "missing",
  range = seq(0.5, 1.5, length.out = 21), fn = function(x)
  cbind(model.frame(params(x)), ll = model.frame(x@ll), model.frame(refpts(x))[,
  -4], stock = c(stock(x)[, ac(range(x)["maxyear"])]%/%bmsy(x)), harvest =
  c(harvest(x)[, ac(range(x)["maxyear"])]%/%fmsy(x))), run = TRUE,
  comp = FALSE, ...)

Arguments

fitted	an object of class biodyn
which	parameters to fix
index	an FLQuant, FLQuants or data.frame object with CPUE indices
range	relative values to fix over
fn	returned values
run	logical, run the profile if TRUE, if FALSE set control slot and return original object

Examples

## Not run: 
library(aspic)
library(biodyn)
data(asp)

## End(Not run)

laurieKell/biodyn documentation built on May 20, 2019, 7:58 p.m.