filter_by_expression_rank: Filter top N TF scores based on expression rank

filter_by_expression_rankR Documentation

Filter top N TF scores based on expression rank

Description

This is .

Usage

filter_by_expression_rank(rep.matrix, tf.scores, query.name, pn = 0.05,
  pnE = 0.05)

Arguments

rep.matrix

is a expression matrix of the representative samples from prepare_representaive_samples

tf.scores

a numeric data.frame containing CaCTS scores.

query.name

name of query cancer type or subtype

pn

percentage of top N scores to be considered. Default 0.05

pnE

percentage of top N expression rank to be considered. Default 0.05

Value

Return the filtered list of CaCTS scores considering expression rank.


lawrenson-lab/CaCTS documentation built on Jan. 30, 2023, 7:38 a.m.