visualize_scores: Vizualize the overall CaCTS scores curve and the expression...

In lawrenson-lab/CaCTS: CaCTS: Cancer Core Transcription factor Specificity (CaCTS). An R package to predict Master Regulator Transcription Factors

Vizualize the overall CaCTS scores curve and the expression values of top N ranked CaCTS scores

Description

the visualize_scores function helps an user to identify the expression profile of a given TF across all cancer type.

Usage

visualize_scores(tf.scores, rep.matrix, topn = 5, query.name, filename,
  h, w)

Arguments

tf.scores	a numeric data.frame containing CaCTS scores.
rep.matrix	a expression matrix of the representative samples
topn	number of top scores TF to be shown (default = 5)
query.name	name of query cancer type or subtype
filename	Name for the plot outuput saved as pdf
h	height value for plot
w	width value for plot

Value

a prot_grid object containing a list of ggplot2 plots

lawrenson-lab/CaCTS documentation built on Jan. 30, 2023, 7:38 a.m.