run_CaCTS_score: Calculate The Jensen-Shannon Divergence considering...
In lawrenson-lab/CaCTS: CaCTS: Cancer Core Transcription factor Specificity (CaCTS). An R package to predict Master Regulator Transcription Factors
run_CaCTS_score R Documentation
Calculate The Jensen-Shannon Divergence considering expression matrix of representative samples
Description
This is a implementation of the Jensen-Shannon Divergence for Transcription Factors expression
across diffrent cancer types. The expectation is that you have cancer cell-type expression specificity.
That are considered as CaCTS scores.
Usage
run_CaCTS_score(rep.matrix, query.name)
Arguments
rep.matrix
is a expression matrix of the representative samples from prepare_representaive_samples
query.index
numeric index of the cancer type to be evaluated as query
Value
Return the list of CaCTS scores assigned to each TF.
lawrenson-lab/CaCTS documentation built on Jan. 30, 2023, 7:38 a.m.
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| run_CaCTS_score | R Documentation |
Calculate The Jensen-Shannon Divergence considering expression matrix of representative samples
Description
This is a implementation of the Jensen-Shannon Divergence for Transcription Factors expression across diffrent cancer types. The expectation is that you have cancer cell-type expression specificity. That are considered as CaCTS scores.
Usage
run_CaCTS_score(rep.matrix, query.name)
Arguments
rep.matrix |
is a expression matrix of the representative samples from prepare_representaive_samples |
query.index |
numeric index of the cancer type to be evaluated as query |
Value
Return the list of CaCTS scores assigned to each TF.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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