Salm_both: A sample 'DESeqResults' object

In lea-rothoerl/DeeDee: Comparative Evaluation and Visualization of Differential Expression Analyses

Description

A sample DESeqResults object, generated with DESeq2

Details

This DESeqResults object contains the results of a Differential Expression Analysis performed on data from the macrophage package, more precisely contrasting the counts from macrophage associated with Salmonella to those associated with IFNg and Salmonella.

The code to create said object can be found in the folder /inst/scripts in the DeeDee package, the file is called generate_data.R.

References

Alasoo, et al. "Shared genetic effects on chromatin and gene expression indicate a role for enhancer priming in immune response", Nature Genetics, January 2018 doi: 10.1038/s41588-018-0046-7.

lea-rothoerl/DeeDee documentation built on Dec. 21, 2021, 9:47 a.m.