deedee_app: DeeDee App

In lea-rothoerl/DeeDee: Comparative Evaluation and Visualization of Differential Expression Analyses

Description

deedee_app opens the DeeDee Shiny web application, combining the functionalities of all other DeeDee functions with a user-friendly graphical user interface.

Usage

deedee_app(deedee_obj = NULL)

Arguments

deedee_obj

An object of the class DeeDeeObject to be analyzed.

Value

A shiny app

Examples

data(DE_results_IFNg_naive, package = "DeeDee")
IFNg_naive <- deedee_prepare(IFNg_naive, "DESeq2")

data(DE_results_IFNg_both, package = "DeeDee")
IFNg_both <- deedee_prepare(IFNg_both, "DESeq2")

data(DE_results_Salm_naive, package = "DeeDee")
Salm_naive <- deedee_prepare(Salm_naive, "DESeq2")

data(DE_results_Salm_both, package = "DeeDee")
Salm_both <- deedee_prepare(Salm_both, "DESeq2")

dd_list <- list(
  IFNg_naive = IFNg_naive, IFNg_both = IFNg_both,
  Salm_naive = Salm_naive, Salm_both = Salm_both
)

if (interactive()) {
  deedee_app(dd_list)
}

lea-rothoerl/DeeDee documentation built on Dec. 21, 2021, 9:47 a.m.