DeeDeeObject-class: DeeDeeObject (S4 class)

In lea-rothoerl/DeeDee: Comparative Evaluation and Visualization of Differential Expression Analyses

Description

DeeDeeObject is the format that the DeeDee App works on. It holds a slot for your list of DeeDee tables. More functionality to come.

Slots

DeeDeeList

Examples

data(DE_results_IFNg_naive, package = "DeeDee")
IFNg_naive <- deedee_prepare(IFNg_naive, "DESeq2")

data(DE_results_IFNg_both, package = "DeeDee")
IFNg_both <- deedee_prepare(IFNg_both, "DESeq2")

data(DE_results_Salm_naive, package = "DeeDee")
Salm_naive <- deedee_prepare(Salm_naive, "DESeq2")

data(DE_results_Salm_both, package = "DeeDee")
Salm_both <- deedee_prepare(Salm_both, "DESeq2")

dd_list <- list(
  IFNg_naive = IFNg_naive, IFNg_both = IFNg_both,
  Salm_naive = Salm_naive, Salm_both = Salm_both
)

# obj <- DeeDeeObject(DeeDeeList = dd_list)

lea-rothoerl/DeeDee documentation built on Dec. 21, 2021, 9:47 a.m.