plot_PCA: Plot a PCA analysis obtained with do_PCA

Description Usage Arguments

View source: R/plot_PCA.R

Description

Plot a PCA analysis obtained with do_PCA

Usage

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plot_PCA(pc, level1, level2 = NULL, level1_name = "Treatment",
  level2_name = "Condition", interactive = FALSE, type = c("none",
  "polygons", "centroids"), draw_lines = FALSE, arrange_plots = TRUE,
  n = NULL, parallel = FALSE, line_size = 0.75)

Arguments

pc

result of do_PCA function

level1

first treatment factor

level2

second treatment factor

interactive

Generate an interactive plot with plotly?

n

number of axes to plot. Default NULL (all)

parallel

parallel coordinates plot?

line_size

size of line for parallel coordinate plot


leandroroser/RNASeqFunctions documentation built on May 17, 2019, 7:31 p.m.