gene_quantile_filter: Gene expression filter by quantile
In lefeverde/basicOmics: Package for basic statistical tests on Omics data
Description
Usage
Arguments
Value
Description
This function first removes rows in which
the max value equals the min value and
then filters the resulting genes by row
medians. Rows with a median greater than
the resulting value of the quantile are
retained.
Usage
1
gene_quantile_filter(expr_mat, quant_val = 0.05)
Arguments
expr_mat
an expression matrix of class matrix
quant_val
quantile threshold
Value
filtered by quantile expresion matrix
lefeverde/basicOmics documentation built on Feb. 28, 2021, 11:03 p.m.
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Description Usage Arguments Value
Description
This function first removes rows in which the max value equals the min value and then filters the resulting genes by row medians. Rows with a median greater than the resulting value of the quantile are retained.
Usage
1 | gene_quantile_filter(expr_mat, quant_val = 0.05)
|
Arguments
expr_mat |
an expression matrix of class matrix |
quant_val |
quantile threshold |
Value
filtered by quantile expresion matrix
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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