q.DEswan: caculate qvalues for DE-SWAN output
In lehallib/DEswan: Differential Expression Sliding Window ANalaysis
Description
Usage
Arguments
Examples
Description
caculate qvalues for DE-SWAN output
Usage
1
q.DEswan(res.DEswan.wide, method)
Arguments
res.DEswan.wide.p:
a data Frame - pvalues from DEswan in a wide format
method:
method for pvalues adjustment. Default is BH
Examples
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res.DEswan=DEswan(data.df = agingplasmaproteome[,-c(1:3)],
qt = agingplasmaproteome[,1],
window.center = seq(40,100,10),
buckets.size = 10,
covariates = agingplasmaproteome[,c(2:3)])
res.DEswan.wide.p=reshape.DEswan(res.DEswan,parameter = 1,factor = "qt")
res.DEswan.wide.q=q.DEswan(res.DEswan.wide.p,method="BH")
head(res.DEswan.wide.q)
lehallib/DEswan documentation built on Oct. 5, 2020, 9:51 p.m.
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Description Usage Arguments Examples
Description
caculate qvalues for DE-SWAN output
Usage
1 | q.DEswan(res.DEswan.wide, method)
|
Arguments
res.DEswan.wide.p: |
a data Frame - pvalues from DEswan in a wide format |
method: |
method for pvalues adjustment. Default is BH |
Examples
1 2 3 4 5 6 7 8 | res.DEswan=DEswan(data.df = agingplasmaproteome[,-c(1:3)],
qt = agingplasmaproteome[,1],
window.center = seq(40,100,10),
buckets.size = 10,
covariates = agingplasmaproteome[,c(2:3)])
res.DEswan.wide.p=reshape.DEswan(res.DEswan,parameter = 1,factor = "qt")
res.DEswan.wide.q=q.DEswan(res.DEswan.wide.p,method="BH")
head(res.DEswan.wide.q)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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