Files in lehner-lab/dimsumms

Analysis scripts to reproduce the figures and results from DiMSum manuscript

R/dimsumms.R R/dimsumms__aa_properties_pca.R R/dimsumms__aa_properties_pca_doubles_loadings.R R/dimsumms__aa_properties_pca_singles_loadings.R R/dimsumms__create_dir.R R/dimsumms__dna_extraction_bottleneck.R R/dimsumms__format_dir.R R/dimsumms__gg_color_hue.R R/dimsumms__ggpairs_binhex.R R/dimsumms__library_bottleneck.R R/dimsumms__load_toxicity.R R/dimsumms__plot_loadings.R R/dimsumms__replicate_bottleneck.R R/dimsumms_aa_properties_mutant_effects.R R/dimsumms_bottleneck_fitness_scatter.R R/dimsumms_bottleneck_fitness_vs_hydrophobicity_scatter.R R/dimsumms_bottleneck_simulations.R R/dimsumms_errormodel_data_manipulations.R R/dimsumms_errormodel_fit.R R/dimsumms_errormodel_leaveoneout.R R/dimsumms_errormodel_leaveoneout_preprocess_datasets.R R/dimsumms_errormodel_random_effect.R R/dimsumms_hierarchical_abundance.R R/dimsumms_prepare_all_dms_dt.R R/dimsumms_prepare_dms_dt.R R/dimsumms_real_bottleneck_scatterplot_matrices.R README.md man/dimsumms.Rd man/dimsumms__aa_properties_pca.Rd man/dimsumms__aa_properties_pca_doubles_loadings.Rd man/dimsumms__aa_properties_pca_singles_loadings.Rd man/dimsumms__create_dir.Rd man/dimsumms__dna_extraction_bottleneck.Rd man/dimsumms__format_dir.Rd man/dimsumms__gg_color_hue.Rd man/dimsumms__ggpairs_binhex.Rd man/dimsumms__library_bottleneck.Rd man/dimsumms__load_toxicity.Rd man/dimsumms__plot_loadings.Rd man/dimsumms__replicate_bottleneck.Rd man/dimsumms_aa_properties_mutant_effects.Rd man/dimsumms_bottleneck_fitness_scatter.Rd man/dimsumms_bottleneck_fitness_vs_hydrophobicity_scatter.Rd man/dimsumms_bottleneck_simulations.Rd man/dimsumms_errormodel_data_manipulations.Rd man/dimsumms_errormodel_fit.Rd man/dimsumms_errormodel_leaveoneout.Rd man/dimsumms_errormodel_leaveoneout_preprocess_datasets.Rd man/dimsumms_errormodel_random_effect.Rd man/dimsumms_hierarchical_abundance.Rd man/dimsumms_prepare_all_dms_dt.Rd man/dimsumms_prepare_dms_dt.Rd man/dimsumms_real_bottleneck_scatterplot_matrices.Rd