dimsumms: dimsumms
In lehner-lab/dimsumms: Analysis scripts to reproduce the figures and results from DiMSum manuscript
Description
Usage
Arguments
Value
Description
Main analysis script.
Usage
1
2
3
dimsumms(startStage = 1, stopStage = 0,
base_dir = "/users/blehner/afaure/DMS/Results/dimsumms_proj",
rerun_raw = F, Ncores = 1)
Arguments
startStage
Start at a specified analysis stage (default:1)
stopStage
Stop at a specified analysis stage (default:0 i.e. no stop condition)
base_dir
Base directory for all output file (default:NB private CRG server path; change accordingly)
rerun_raw
re-run raw data preprocessing (default:F)
Ncores
# cores available to parallelize leave-one-out cross validation workflow (stage 4)
Value
Nothing
lehner-lab/dimsumms documentation built on June 23, 2020, 5:48 p.m.
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Description Usage Arguments Value
Description
Main analysis script.
Usage
1 2 3 | dimsumms(startStage = 1, stopStage = 0,
base_dir = "/users/blehner/afaure/DMS/Results/dimsumms_proj",
rerun_raw = F, Ncores = 1)
|
Arguments
startStage |
Start at a specified analysis stage (default:1) |
stopStage |
Stop at a specified analysis stage (default:0 i.e. no stop condition) |
base_dir |
Base directory for all output file (default:NB private CRG server path; change accordingly) |
rerun_raw |
re-run raw data preprocessing (default:F) |
Ncores |
# cores available to parallelize leave-one-out cross validation workflow (stage 4) |
Value
Nothing
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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