Man pages for leiming8886/fRNC
ncRNA module search functions
| case.exp_miRNA | miRNA-seq expression data in the ECSA cancer samples |
| case.exp_rna | RNA-seq expression data in the ECSA cancer samples |
| cepair | extract lncRNA-circRNA ceRNA pair |
| clinData | clinical data in the ECSA cancer patients |
| combinp | Generate corrected p-value based on p-value and logFC in the... |
| control.exp_miRNA | miRNA-seq expression data in the ECSA normal samples |
| control.exp_rna | RNA-seq expression data in the ECSA normal samples |
| dataN | Example node_attr for ncRNA network |
| DEGs | Performe differential expression analysis |
| ESCA_clinical | clinical data in the ECSA cancer patients |
| fRNC-package | fRNC: Search for modules in a node-weighted ncRNA network |
| gene_type | Table of the gene identifier and the type for ensembl ID |
| IDsymbol | Table of the gene identifier and the gene symbol |
| integPvals | Integrate multiple p-values into joint p-values |
| interStringency | Extract interactions according to stringency and interaction... |
| plotSub | Plot of the subnetwork |
| runmodule | Run module search function |
| savelocalM | save and plot module with local method |
| saveNetwork | save the subnetwork with global method |
| survival.km | Performe univariate Cox regression analysis and plot... |
| survival.miR_rna | survival analysis |
| survival.rna | Performe univariate Cox regression analysis |
