survival.km: Performe univariate Cox regression analysis and plot...

In leiming8886/fRNC: ncRNA module search functions

Performe univariate Cox regression analysis and plot Kaplan-Meier curve of the RNC module

Description

univariate Cox regression analysis using survival with survival data and expression data,and Patients with higher and lower than the median risk score of the he dysregulated RNC are classified into different groups. Kaplan-Meier survival analysis was used to assess the clinical significance between the comparison groups

Usage

survival.km(
  gene_profile = NULL,
  clinData = NULL,
  genes = NULL,
  filename = "temp"
)

Arguments

gene_profile	the expression value matrix, in which the row name is gene id and the column name is sample id
clinData	the survival data, in which the column name is sample id, Survival(time) and Status(0,1)
genes	the gene in the RNC, The name of mature miRNA is miRbase ID, and name of lncRNA and RBP is Ensemble gene ID
filename	the output figure name in Kaplan-Meier curve

Value

contain the figure with the pdf format in Kaplan-Meier curve

leiming8886/fRNC documentation built on Feb. 21, 2023, 4:12 p.m.