Man pages for lengning/gClinBiomarker
gClinBiomarker: an R package for clinical biomarker analyses
| add_eqv_aes | Add equivalent Americanized and base equivalent names to... |
| addGrid | Add a Grid to an Existing Plot. |
| addTableToMargin | Create Tabular Environment from Matrix and Add it to Margin. |
| addXlabTable | Create Tabular Environment from Matrix and Add it to Bottom... |
| aes_arg_is_uneval | Determine if an argument is an unevaluated expression |
| allowed_aesthetics | Get list of allowed aesthetics for a given geometry class |
| append_split_terms | Wrap a formula in a helper list splitting response and... |
| append_weights | Append argument list with calculated weights as frequency |
| as.rgb | Convert color-names or RGB-code to possibly semi-transparent... |
| augment_predict | Adds prediction outputs to data based on model and formula |
| AvailableDocs | Show available documents |
| BoxPlot | Box/Box-Percentile Plot with additional vertical stripchart,... |
| BPplot | Enhanced Box-Percentile Plots. |
| clean_emmeans_specs | Helper function to clean one-sided formulas for emmeans |
| coerce_from_factor | Coerce dataframe variables to new type |
| CompareKM | Compare KM curve of full population vs. BEP |
| copy_variable_attributes | Copy attributes of dataframe variables from a source... |
| CoxTab | Summary outputs from cox proportional model |
| filter_aesthetics | Helper function to filter aesthetic mappings based on... |
| filter_args | Helper function for ggpack to filter arguments based on a... |
| flatten_aesthetics_to_group | Helper function to flatten specific aesthetics to group |
| geom_text_table | Geom to display text as a table overlayed upon the plot |
| GeomTextTable | A ggplot2 Geom object to add a table of text values to a plot |
| get.colors | Choose an R standard color or get the RGB-code of an... |
| get_emmeans_specs_predictors | Return predictors from specs input |
| getMatrix | Construct Matrix from Formula and Names. |
| get_model_formula | Get model formula from a model object |
| ggpack | Handling of argument passing to ggplots |
| ggpacket-class | A class for wrapping ggplot layers. |
| ggpk_decorators | Wrapper for common decorators to package |
| ggpk_line_errorbar | ggplot wrapper for plotting ribbon, taking a stats string or... |
| ggpk_ribbons | ggplot wrapper for plotting ribbon, taking a stats string or... |
| initialize-ggpacket-method | Initialize empty ggpacket |
| input | Data example |
| input.specs | Data specs example |
| LogRankTab | Log rank test p value and other summary statistics for... |
| longbmkr | Simulated longitudinal biomarker data |
| names-ggpacket-method | Overload names method to print ggpacket ggcall list names |
| numeric_means | List means over numeric variables |
| OpenDoc | Access package documents |
| PlotDens | Plot Density |
| PlotKM | Generate KM curve(s) for full population or subgroups defined... |
| PlotLong | Wrapper for fitting model and adjusting to predicted values... |
| PlotParam | Set graphical parameters |
| PlotProperty | Plot Distribution |
| PlotRspBar | Generate bar plot to summarize response outcome by subgroups |
| PlotSTEPP | Create a STEPP (Subpopulation Treatment Effect Pattern Plot) |
| PlotTabForestBiomarker | Generate forest plot and summarization table for 2-arm or... |
| PlotTabForestMulti | Generate forest plot and summarization table for 2-arm or... |
| plus-gg-ggpacket-method | Combine ggpacket contents with gg call to incorporate... |
| plus-ggpacket-ANY-method | Primitive methods for adding ggpackets to various ggplot... |
| plus-NULL-ggpacket-method | Add NULL to a ggpacket to return the ggpacket |
| print_to_string | Capture output and return as string |
| ReadData | Read data |
| ReadVAD | Read a VAD |
| remove_aesthetics | Helper function to filter out aesthetics from mappings |
| safe_private_export | A function for safely trying to get private namespace... |
| sas.emmeans | Compute emmeans to mirror SAS emmeans functionality |
| show-ggpacket-method | Overload show method to print ggpacket |
| sink_to_temp | Helper function to hide side effect output to console |
| split_aes_from_dots | Helper function to cull aesthetic mapping from parameter... |
| split_on_name | Helper function to split a list on a named args |
| stat_summary_funs | helper function to interpret strings and functions passed to... |
| sub-ggpacket-ANY-ANY-ANY-method | Overload [ generic to index into ggcalls list |
| sub-sub-ggpacket-method | Overload [ generic to index into ggcalls list |
| summarize_unary_vars | Produce summary table of unary value of specified levels |
| SummarySingle | Summary a single covariate, test across treatment and/or... |
| SummaryTwoGroups | Summary statistics of two-group comparison |
| SummaryVars | Summary multiple covariates, test across treatment and/or... |
