In leppott/BioMonTools: Tools for Biomonitoring and Bioassessment

knitr::opts_chunk$set(echo = FALSE)

Purpose

This function calculates an assortment of biological metrics based on the traits/attributes in the input file.

Click below to see the list of available metrics for periphyton.

shiny::a("Metric Names", href = "MetricNames.xlsx")

You can request the addition of new metrics to the R package or Shiny app by emailing Erik ([e-mail]) or posting your request on the BioMonTools GitHub page (https://github.com/leppott/BioMonTools/discussions).

Additional Notes

• If taxa are missing attribute assignments, either leave the entry blank or populate with ‘NA.’

• The R code that is used to calculate the metrics can be found here:

  • https://github.com/leppott/BioMonTools/blob/master/R/metric_values.R

Last updated 2022-02-01

leppott/BioMonTools documentation built on March 1, 2025, 7:18 a.m.