data-raw/ProcessData_metval_SCMB_IBI.R

In leppott/BioMonTools: Tools for Biomonitoring and Bioassessment

# Prepare data for example for metric.stats()

# Erik.Leppo@tetratech.com
# 2022-03-22
# 2022-11-15 (EWL) update for INDEX_CLASS
#~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

# 0. Prep####
wd <- getwd() # assume is package directory
#library(devtools)

# df.1, date, time, and datetime
# df.2 only datetime (different format)
# df.3 subset (one month) of df.2

# 1. Get data and process#####
# 1.1. Import Data
fn <- "data_metval_SCMB_IBI.tsv"
df <- read.delim(file.path(wd, "data-raw", "data", fn))

# Change Names
names(df)[names(df) %in% "Index_Region"] <- "INDEX_CLASS"

# 1.2. Process Data
#View(df)
# QC check
#dim(df)
# structure
str(df)

##~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
# 2. Save as RDA for use in package####
#
data_metval_scmb_ibi <- df
usethis::use_data(data_metval_scmb_ibi, overwrite = TRUE)