Files in leppott/MBSStools
MBSS tool suite for calculations and data manipulation
.Rbuildignore
.github/.gitignore
.github/ISSUE_TEMPLATE/bug_report.md
.github/ISSUE_TEMPLATE/feature_request.md
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.github/workflows/test-coverage.yaml
.gitignore
DESCRIPTION
LICENSE.md
MBSStools.Rproj
NAMESPACE
NEWS
NEWS.md
NEWS.rmd
R/FlowSum.R
R/IonContrib.R
R/MapTaxaObs.R
R/PHIcalc.R
R/data.r
R/metric.scores.R
R/metric.values.R
R/qc_taxa.R
R/runShiny.R
R/strata.R
README.Rmd
README.md
_pkgdown.yml
data-raw/DATASET.R
data-raw/December 2016 - Salt Results - Final.xlsx
data-raw/IonMatrixRefVals.xlsx
data-raw/ProcessData_Flow.R
data-raw/ProcessData_IBI_metrics.scoring.R
data-raw/ProcessData_IBI_taxa_bugs_family.R
data-raw/ProcessData_IBI_taxa_bugs_genus.R
data-raw/ProcessData_IBI_taxa_fish.R
data-raw/ProcessData_Ion.R
data-raw/ProcessData_PHI.R
data-raw/ProcessData_strata.R
data-raw/metrics.adjusment.tab
data-raw/metrics.scoring.tab
data-raw/metrics.scoring_Matt.tab
data-raw/metrics.scoring_old.tab
data-raw/taxa_bugs_family.tab
data-raw/taxa_bugs_genus.tab
data-raw/taxa_fish.tab
data-raw/tblSumFlow15.xls
data/MBSS.Ion.Data.rda
data/MBSS.Ion.Ref.rda
data/MBSS.PHI.rda
data/MBSS.flow.rda
data/metrics_scoring.rda
data/shp_strata_bugs.rda
data/shp_strata_fish.rda
data/shp_strata_msw.rda
data/taxa_bugs_family.rda
data/taxa_bugs_genus.rda
data/taxa_fish.rda
doc/MBSStools_vignette.R
doc/MBSStools_vignette.html
inst/extdata/AllFish_95to16.xls
inst/extdata/BIBI_1998_Stribling_et_al_ea-99-6.pdf
inst/extdata/MBSS_Install_Guide.pdf
inst/extdata/MBSStools_Install_Guide.Rmd
inst/extdata/MBSStools_Install_Guide.nb.html
inst/extdata/MD_GIS.zip
inst/extdata/MD_GIS_strata.zip
inst/extdata/Notebook_MBSStools.Rmd
inst/extdata/Notebook_MBSStools.nb.html
inst/extdata/PHI_Worksheet_from_MP_Leppo20170329.xls
inst/extdata/Paul_et_al_2003_MBSS_ea-03-4_phi.pdf
inst/extdata/Southerland_et_al_2005_MBSS_new_ibi_ea-05-13.pdf
inst/extdata/TaxaMapsCrossWalk20170731.xlsx
inst/shiny-examples/MBSStools/Examples/deleteme.txt
inst/shiny-examples/MBSStools/Examples/example_bugs_family.tsv
inst/shiny-examples/MBSStools/Examples/example_bugs_genus.tsv
inst/shiny-examples/MBSStools/Examples/example_bugs_genus_nonMBSS.tsv
inst/shiny-examples/MBSStools/Examples/example_fish.tsv
inst/shiny-examples/MBSStools/Results/deleteme.txt
inst/shiny-examples/MBSStools/global.R
inst/shiny-examples/MBSStools/rsconnect/shinyapps.io/leppott/MBSStools.dcf
inst/shiny-examples/MBSStools/rsconnect/shinyapps.io/tetratech-wtr-wne/MBSStools.dcf
inst/shiny-examples/MBSStools/server.R
inst/shiny-examples/MBSStools/ui.R
inst/shiny-examples/MBSStools/www/MBSStools_vignette.html
man/FlowSum.Rd
man/IonContrib.Rd
man/MBSS.Ion.Data.Rd
man/MBSS.Ion.Ref.Rd
man/MBSS.PHI.Rd
man/MBSS.flow.Rd
man/MapTaxaObs.Rd
man/PHIcalc.Rd
man/metric.scores.Rd
man/metric.values.Rd
man/metric.values.algae.Rd
man/metric.values.bugs.Rd
man/metric.values.fish.Rd
man/metrics_scoring.Rd
man/qc_taxa.Rd
man/runShiny.Rd
man/shp_strata_bugs.Rd
man/shp_strata_fish.Rd
man/shp_strata_msw.Rd
man/strata.Rd
man/taxa_bugs_family.Rd
man/taxa_bugs_genus.Rd
man/taxa_fish.Rd
tests/testthat.R
tests/testthat/test_PHI.R
tests/testthat/test_qc_taxa.R
tests/testthat/test_thresholds_numdigits.R
vignettes/MBSStools_vignette.Rmd
vignettes/MBSStools_vignette.html
vignettes/map_BrownTrout.png
