ensembl2hgnc: Ensembl ids 2 hgnc

In letaylor/bioutils: Useful functions for computational biology

Description

ensembl2hgnc converts Ensembl gene ids to hgnc symbols. If no hgnc symbol then uses external_gene_name. If no external_gene_name then uses Ensembl gene id.

Usage

ensembl2hgnc(ensembl_gene_ids, host = "grch37.ensembl.org",
  drop_dot_ensembl_id = TRUE)

Arguments

ensembl_gene_ids	Character vector. List of Ensembl gene ids to get hgnc symbols for.
host	Character. Ensembl biomaRt host.
drop_dot_ensembl_id	Logical. Drop "." from ENSG00000072310.12

Value

Character. The corresponding hgnc symbols to the Ensembl ids.

Examples

ensembl2hgnc(c("ENSG00000109501", "ENSG00000058453", "ENSG00000030066"))

letaylor/bioutils documentation built on May 5, 2019, 7:09 a.m.