rsid2varinfo: rsid to variant info.

In letaylor/bioutils: Useful functions for computational biology

Description

rsid2varinfo looks up information from var_attributes for rs ids.

Usage

rsid2varinfo(rs_ids, host = "grch37.ensembl.org",
  var_attributes = c("refsnp_id", "chr_name", "chrom_start", "allele"))

Arguments

rs_ids	Character vector. List of rs gene ids to get information for.
host	Character. Ensembl biomaRt host.
var_attributes	Character vector. List of attributes to select from Ensembl.

Value

Data.frame. Data.frame of the attributes requested. Note that duplicates are removed and the order is not the same as given.

Examples

rsid2varinfo(c("rs8050136", "rs780094", "rs16942", "rs8050136"))

letaylor/bioutils documentation built on May 5, 2019, 7:09 a.m.