id: An 'mzIdentML' file
In lgatto/RforProteomics: Companion package to the 'Using R and Bioconductor for proteomics data analysis' publication
id R Documentation
An mzIdentML file
Description
This file has been generated by searching the raw mzXML file of
the ProteomeXchange PXD000001 data set against the
erwinia_carotovora.fasta using the MSGF+ search engine:
java -jar ~/bin/MSGFPlus.20140630/MSGFPlus.jar -s
TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01.mzXML -d
erwinia_carotovora.fasta -inst 1 -protocol 2
Examples
## source files to repeat the search
library("rpx")
px <- PXDataset("PXD000001")
pxfiles(px)
f <- dir(system.file("extdata", package = "RforProteomics"),
pattern = "mzid", full.names=TRUE)
library("mzID")
id <- mzID(f)
id
lgatto/RforProteomics documentation built on May 10, 2023, 11:51 p.m.
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| id | R Documentation |
An mzIdentML file
Description
This file has been generated by searching the raw mzXML file of
the ProteomeXchange PXD000001 data set against the
erwinia_carotovora.fasta using the MSGF+ search engine:
java -jar ~/bin/MSGFPlus.20140630/MSGFPlus.jar -s
TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01.mzXML -d
erwinia_carotovora.fasta -inst 1 -protocol 2
Examples
## source files to repeat the search
library("rpx")
px <- PXDataset("PXD000001")
pxfiles(px)
f <- dir(system.file("extdata", package = "RforProteomics"),
pattern = "mzid", full.names=TRUE)
library("mzID")
id <- mzID(f)
id
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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