proteomicsPackages: Proteomics and MS biocView packages

In lgatto/RforProteomics: Companion package to the 'Using R and Bioconductor for proteomics data analysis' publication

Proteomics and MS biocView packages

Description

Searches for all the packages with the "Proteomics" (software), "MassSpectrometry" (software) and "MassSepctrometryData" (data) packages and return their names, titles and versions as a data.frame. The (unexported but documented) underlying functions are RforProteomics:::getPackagesInBiocView (to find relevant package) and RforProteomics:::packageDF (data.frame formatting).

Usage

proteomicsPackages(biocv, cache = FALSE)

massSpectrometryPackages(biocv, cache = FALSE)

massSpectrometryDataPackages(biocv, cache = FALSE)

Arguments

biocv	A character with the Bioconductor version to search for relevant packages. If missing, the running version is used.
cache	A logical indicating whether cached package information should be used. Default is FALSE. All except development versions are up-to-date.

Value

A data.frame with the respective package names, titles and versions.

Author(s)

Laurent Gatto

Examples

head(pp <- proteomicsPackages("3.0"))
ppc <- proteomicsPackages("3.0", cache = TRUE)
all.equal(pp, ppc)

lgatto/RforProteomics documentation built on May 10, 2023, 11:51 p.m.