omim_based_silver_standard: Silver standard based on OMIM <-> HPO/pheocode mapping
In liangyy/silver-standard-performance: Generating PR/ROC curves in light and flexible way
Description
Usage
Format
Source
Examples
Description
The MIM phenotype to MIM gene map is obtained from genemap2.txt
provided by OMIM database (accessed at 07/2019).
The MIM phenotypes to HPO/phecode map is provided by Lisa Bastarache.
Usage
1
Format
a list of:
1. table: a data.frame with
column gene (with Ensembl ID, e.g. ENSG00000133019) ,
column HPO (HPO term in the format HP:0000126),
column phecode (e.g. 595),
column EFO (e.g. EFO:0004238);
2. script_info: meta information on how data set is generated.
Source
Source code generating this silver standard dataset
Examples
1
2
liangyy/silver-standard-performance documentation built on Dec. 5, 2019, 8:53 a.m.
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Description Usage Format Source Examples
Description
The MIM phenotype to MIM gene map is obtained from genemap2.txt provided by OMIM database (accessed at 07/2019). The MIM phenotypes to HPO/phecode map is provided by Lisa Bastarache.
Usage
1 |
Format
a list of: 1. table: a data.frame with column gene (with Ensembl ID, e.g. ENSG00000133019) , column HPO (HPO term in the format HP:0000126), column phecode (e.g. 595), column EFO (e.g. EFO:0004238); 2. script_info: meta information on how data set is generated.
Source
Source code generating this silver standard dataset
Examples
1 2 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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